Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70670 197 / 5e-65 AtCLO4 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) AT1G70680 187 / 5e-61 Caleosin-related family protein (.1) AT1G23240 167 / 2e-53 Caleosin-related family protein (.1.2.3) AT1G23250 145 / 3e-44 Caleosin-related family protein (.1) AT2G33380 137 / 9e-41 AtCLO3, CLO-3, RD20 RESPONSIVE TO DESSICATION 20, Arabidopsis thaliana caleosin 3, Caleosin-related family protein (.1.2) AT4G26740 133 / 3e-39 CLO1, ATPXG1, ATS1 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) AT5G55240 127 / 8e-37 ATPXG2 ARABIDOPSIS THALIANA PEROXYGENASE 2 (.1) AT5G29560 120 / 3e-34 caleosin-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041446 [exp] 220 / 2e-74 AT1G70670 203 / 2e-67 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10034325 [exp] 181 / 4e-58 AT1G70670 197 / 3e-64 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10011775 [exp] 129 / 1e-37 AT4G26740 361 / 1e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) Lus10023732 [exp] 129 / 2e-37 AT4G26740 360 / 3e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107900 [exp] 212 / 2e-70 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Potri.008G133800 [exp] 203 / 2e-67 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Potri.010G066600 [exp] 133 / 3e-39 AT4G26740 377 / 5e-134 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF05042 [flax] [poplar] Caleosin Caleosin related protein
Representative CDS sequence Show only first row Show all	>Lus10014588 pacid=23170877 polypeptide=Lus10014588 locus=Lus10014588.g ID=Lus10014588.BGIv1.0 annot-version=v1.0 ATGGCGTCATACACCCTTCGGATACCTATCGAGTGTAATGTTGTGAACGAGCTAAGTGCAGGTCTTCGTGCAATCGGGGCAGGCATTTTACTATCTGCAT CAGTCACATTCATCATCCATCTTGGCTTCAGCGGAAGGACTCGCCCTGGAAAGCCTCCGTCCATCCGATTACCTATCGAGATTAAGAACATTAAGAGAGC TAAACATGGGAGTGACTCTGGTGTCTATGATTCCGAGGGAAGATTTGTTCCCGAAAAGTTCGAAGAGATTTTTGCCAAGAATGAGAAGACACATCAAAAT GCTTTAACTTCGAAGGAAGTCGAGGAGTTAATGAAGCGTAATCGAGAACCGAAAGACTACCTAGGATGGTTGGCTGGGTTTATCGAGTGGAAAGTTCTGT ACAATTTGGCAAAGGACCGAAACGGTTTGCTGCAGAAAGAAACGGTTCGATCTGTGTATGATGGAAGCCTCTTTGAAGTTTTGGAGAAAGACAGGAAATC ATCAAAGAAACCCTAA
AA sequence Show only first row Show all	>Lus10014588 pacid=23170877 polypeptide=Lus10014588 locus=Lus10014588.g ID=Lus10014588.BGIv1.0 annot-version=v1.0 MASYTLRIPIECNVVNELSAGLRAIGAGILLSASVTFIIHLGFSGRTRPGKPPSIRLPIEIKNIKRAKHGSDSGVYDSEGRFVPEKFEEIFAKNEKTHQN ALTSKEVEELMKRNREPKDYLGWLAGFIEWKVLYNLAKDRNGLLQKETVRSVYDGSLFEVLEKDRKSSKKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	0	1
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042078 [exp]	1.0	0.9693
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	2.4	0.9594
AT1G54730			Major facilitator superfamily ...		Lus10029961 [exp]	2.8	0.9575
AT3G61930			unknown protein		Lus10030203 [exp]	3.5	0.9530
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037661 [exp]	3.6	0.9344
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	3.9	0.9588
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	3.9	0.9543
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	4.6	0.9485
AT1G54730			Major facilitator superfamily ...		Lus10029960 [exp]	4.9	0.9479
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10006505 [exp]	7.1	0.9293

Compare expression of checked genes

Lus10014588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.