Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19830 316 / 3e-110 Peptidyl-tRNA hydrolase family protein (.1) AT5G38290 221 / 1e-72 Peptidyl-tRNA hydrolase family protein (.1.2) AT5G16140 220 / 4e-72 Peptidyl-tRNA hydrolase family protein (.1.2) AT1G18440 221 / 5e-72 Peptidyl-tRNA hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032093 [exp] 361 / 2e-124 AT3G27460 282 / 8e-93 SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2) Lus10042977 [exp] 221 / 6e-73 AT1G18440 345 / 6e-121 Peptidyl-tRNA hydrolase family protein (.1) Lus10031901 [exp] 216 / 1e-70 AT5G16140 333 / 1e-116 Peptidyl-tRNA hydrolase family protein (.1.2) Lus10032480 [exp] 203 / 3e-65 AT1G18440 332 / 5e-115 Peptidyl-tRNA hydrolase family protein (.1) Lus10031327 [exp] 177 / 1e-56 AT5G38290 240 / 2e-81 Peptidyl-tRNA hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005000 [exp] 349 / 3e-123 AT5G19830 327 / 4e-115 Peptidyl-tRNA hydrolase family protein (.1) Potri.004G098100 [exp] 236 / 3e-78 AT5G38290 348 / 3e-122 Peptidyl-tRNA hydrolase family protein (.1.2) Potri.012G061100 [exp] 223 / 6e-73 AT1G18440 343 / 2e-119 Peptidyl-tRNA hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01195 [flax] [poplar] Pept_tRNA_hydro Peptidyl-tRNA hydrolase
Representative CDS sequence Show only first row Show all	>Lus10014589 pacid=23170973 polypeptide=Lus10014589 locus=Lus10014589.g ID=Lus10014589.BGIv1.0 annot-version=v1.0 ATGCTTAGTAGAATTCCTAAGCGTTGCTTTTGTACTACTGCTACCAAAAAGCCATGGCTCTTTGTGGGCCTAGGCAATCCTGGAGAGAAGTTCAAAAGAA CTCGTCACAATGTGTGTAGTAAATTGTGTATGCTAAGGGCTCGATTTCCGGGTTCCTCCCCTTATGTGGGGTTTGAGATGATTGATGCATTTGCTGAATC AGAAGGAATTCCTATGGATAAAGTGCAATGTAAAGCTATGTATGGAGAAGCTTTTATTGGAGAAGCACCCGTCCTTCTTGCGAAGCCTCAAACGTACATG AATCTGAGTGGTGAATCGGTCGGGCCTCTTGCAGCTTATTACAAACTACCTCTAAACCGAGTCTTAGTGTTTCATGATGACATGGACTTGCCTTGTGGAG TGCTTCGACTTCAACCAAAGGGAGGTCATGGAAGCCACAACGGTTTGAAGAATGTGATCTATCATTTTCGAAACAACAGAGAATTTGCTCGACTCAGGAT AGGGATTGGGAGACCTCCTGGTCAAATGGACCCAAAGGCTTTCTTGTTGCAGAGGTTCAATGCCACAGCTCAACAGCGAATTGATGCGGCTTTGCCGGAA GGAATTGATGCATTGAAGTCAATTCTATCAAGAGGGTTGACAGAGACAGGGAGATGGTTCAACCAACAACAAAAGTACAAGCACATAAGATTGCAAACTC TCCCAACATGA
AA sequence Show only first row Show all	>Lus10014589 pacid=23170973 polypeptide=Lus10014589 locus=Lus10014589.g ID=Lus10014589.BGIv1.0 annot-version=v1.0 MLSRIPKRCFCTTATKKPWLFVGLGNPGEKFKRTRHNVCSKLCMLRARFPGSSPYVGFEMIDAFAESEGIPMDKVQCKAMYGEAFIGEAPVLLAKPQTYM NLSGESVGPLAAYYKLPLNRVLVFHDDMDLPCGVLRLQPKGGHGSHNGLKNVIYHFRNNREFARLRIGIGRPPGQMDPKAFLLQRFNATAQQRIDAALPE GIDALKSILSRGLTETGRWFNQQQKYKHIRLQTLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19830			Peptidyl-tRNA hydrolase family...		Lus10014589 [exp]	0	1
					Lus10011007 [exp]	4.0	0.8821
AT2G35450			catalytics;hydrolases (.1)		Lus10015759 [exp]	13.0	0.9038
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	14.5	0.8785
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	16.9	0.8666
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	23.5	0.8621
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014895 [exp]	25.3	0.8518
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10026441 [exp]	30.6	0.8555
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10028400 [exp]	31.5	0.8214
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10029765 [exp]	32.2	0.8674
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	35.1	0.8676

Compare expression of checked genes

Lus10014589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.