Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45790 89 / 7e-22 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G33495 48 / 6e-07 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005755 [exp] 50 / 8e-08 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10027440 [exp] 50 / 1e-07 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G030300 [exp] 89 / 2e-21 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.015G141700 [exp] 51 / 5e-08 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10014590 pacid=23170892 polypeptide=Lus10014590 locus=Lus10014590.g ID=Lus10014590.BGIv1.0 annot-version=v1.0 ATGTTGGGTACTTATAATGTCAATTTACCGCTATTAAGGACAAAACTGTCTTTCCCCTTCCCTCCCACCTTCTTCCTCTTCCGCCTAGTCGCGTACAGCA ACTCGCCGCCGCCGTATCAATTCTGTCACCTCCACCGTATCCAGTCTGCCACTGCCGTATTCAGCCGCATCGACGCTGTCTTCCTTCTCTTAGGGGATGC AATATATTGGAAGTATCTTCTGAAAATTTCTACTACCTTGTATTGGTGGCTGAATGTCAAGAGGGATGAGAGTTTAGGCCTGGCAGAGATCGAAAAATGG AGAGAGAAGGAGTACAAAGACAAGTGGCTGAGTGAACTTGAGACGAATTATGCATTTCGCATTCATTATCCGACAGGGTTTAAGATTAAGGGAGGCCTTA GAGAGCAGATGCTGAATTGGCAAAGGGTTCCTTGA
AA sequence Show only first row Show all	>Lus10014590 pacid=23170892 polypeptide=Lus10014590 locus=Lus10014590.g ID=Lus10014590.BGIv1.0 annot-version=v1.0 MLGTYNVNLPLLRTKLSFPFPPTFFLFRLVAYSNSPPPYQFCHLHRIQSATAVFSRIDAVFLLLGDAIYWKYLLKISTTLYWWLNVKRDESLGLAEIEKW REKEYKDKWLSELETNYAFRIHYPTGFKIKGGLREQMLNWQRVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45790			Ubiquitin carboxyl-terminal hy...		Lus10014590 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10015424 [exp]	10.0	0.7573
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003062 [exp]	19.0	0.7269
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Lus10043085 [exp]	54.1	0.6391
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10038464 [exp]	61.5	0.6793
AT1G72660			P-loop containing nucleoside t...		Lus10015662 [exp]	63.5	0.6636
					Lus10031222 [exp]	66.5	0.6490
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10019200 [exp]	70.1	0.5851
AT1G67170			unknown protein		Lus10035371 [exp]	91.5	0.6603
AT1G14740			Protein of unknown function (D...		Lus10030771 [exp]	93.4	0.6121
AT5G35560			DENN (AEX-3) domain-containing...		Lus10033443 [exp]	98.9	0.6486

Compare expression of checked genes

Lus10014590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.