Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04160 716 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 680 / 0 ATSBT5.4 Subtilase family protein (.1) AT5G67360 576 / 0 ARA12 Subtilase family protein (.1) AT4G34980 556 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 551 / 0 Subtilase family protein (.1) AT5G45650 529 / 1e-173 subtilase family protein (.1) AT3G14240 524 / 7e-172 Subtilase family protein (.1) AT1G04110 512 / 3e-167 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 510 / 8e-167 Subtilase family protein (.1) AT1G20160 508 / 2e-166 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032096 [exp] 1366 / 0 AT1G20160 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Lus10023048 [exp] 873 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 847 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10016064 [exp] 721 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10032425 [exp] 709 / 0 AT5G59810 607 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 648 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 645 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039085 [exp] 640 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 638 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G050000 [exp] 831 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 827 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 827 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.005G067200 [exp] 791 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102100 [exp] 785 / 0 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102250 [exp] 778 / 0 AT2G04160 821 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G165900 [exp] 756 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 755 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 729 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.001G469000 [exp] 703 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10014591 pacid=23170909 polypeptide=Lus10014591 locus=Lus10014591.g ID=Lus10014591.BGIv1.0 annot-version=v1.0 ATGAGGAGCACTTTCAGACGTGTTTGCTGTTTTGCAGCGTTGCTTTCCTTGTGCATCCTCAACTCAGCCTATGCTGCGGATAAGGCAACTTTACTCCTGT TCTGCAGGAATTCGAACGGGCCGTTAATCGACCAGGACTTGGATGGCGATGCCATGAGCGAGACGTACCATGGCGTTCTCGCCTCTTGCATGGAAAGCAA CGAGGAGAAGGCCAGAGAAGCCATATTCTATTCATACTCCAGCAGGTTCAATGGATTTGCAGCAAGTTTGGAGGATGTTGAAGCTGAGCAACTTGAGAGC CATCCTGAAGTAATAGCAGTGCTGCCAAATGAAGTTTACCAAATACAAATAACTAGCTCCTGGCTATTTCTGGGGCTGGAGAACAGTGCCGGAACAGTCC CACCTGAGTCCCTCTGGACAAAGGCCAAATTCGGTCGCGATGTCATTATCGGAAACCTCGACACCGGCGTTTGGCCCGAATCCCCATTCTTCAAGGACAC AGGACTGGGACCAATTCCATCCAGGTGGAAAGGCAAATGCGCCGTCGCCAACGGCACTACACCTCCGTTCAAATGCAACCGGAAGCTGATAGGAGCAAGA GCCTTCAACAGCGCATCTCCACGTGACGTGAACGGCCACGGCACCCACACACTTTCCACAGCTGGCGGCTCGTTCGTCCCGGGAGCCAACTTCCTAGGAT CGGCTAAAGGAACGGCGAAAGGCGGTTCACCGGGAGCCAGAGTCGCCGCGTACAAAGTCTGCAGCGACAATGGCGGGTGCGGTTCTGCAGACATACTTGC AGGATTCGACGCCGCGATTCAAGATAAAGTGGATGTGATTACCGTCTCTCTTGGTTCGAACGTACCTAATGATTACGTCAGGGACACCATCGCGATTGGG TCGTTCCACGCCGTGAGGAGTGGGATTCCTGTAGTTTGTTCGGCTGGGAATTCTGGGCTTGATGGCTCGGTTAGCAATGTTGCTCCCTGGATTCTTACTG TTGCTGCTAGTACACTCGATCGGCGATTCGTCTCCGATGTGAAGCTGGGGAATGGGAAGGTGTACAAGGGGATAAGCTTCTCGAGCAATACTACTCCGTC CAAGAAGTTTCATCCCTTGATCAATGCTGTTGCTGCCAAAGCACCTGGTGCCTCTGAATTTAACGCACGGTACTGCAATCCTGGAAGCTTGGATCCAAGC AAGGTGAAGGGCAAGATAGTGTTCTGTATTCGTAACGGTGTAGATGTTCAGAAAAGCTACGTTGTGGAACAAGCTGGTGGAGTTGGAGTAGTCCTTGCTA ATCCATCTTCAGGTGCCACCGGTCCTCAAGCTCATTTCATCCCCACTTCAGCCATCTCTAAGGTGGATGGTGATGCCGTTCTTAAATACATCTCCAACAC CTCGTCCCCAGTGGCTTACATAATTGGTTACACAGAGATAGGAAAAGTTGCAGCACCTGTGATGGCTGGGTTCTCATCTCGCGGACCTAACCGTATAACT CCCGAGATCCTCAAGCCAGATGTGACAGCACCAGGTGTGTACATATTAGCCGGATACACAGAAGCCAAAGGTCCAACAGGGCAATCTTTCGACAACCGTC GTATCCCATACAACATCATATCTGGGACATCGATGTCTTGTCCCCATGTCGCCGGAATTGTTGGCCTCCTCAAGACCCTTCACCCTAAATGGAGCCCTGC TGCCATTAGATCTGCCATCATCACTACTGCCAATACAATGAATAACAAGGGACAGCCAATCCAAATGGAATCCGGAACCAAAGCCAACCAATTCAACTAC GGAGCAGGACACGTCACGCCCAACAAAGCAGCATCTCCAGGACTAGTTTACGAGCTAAACCTCACGGACAACTTGAACTTCCTCTGCTACATAGGCTACA CTCCCCAGCAGATTGCCGTTTTCCACGACAAGCCGTACACCTGTCCGCAGAAGACGGCCACAAGCCTATCCAACCTCAACTACCCTTCCATTTCGGTCCC TAATCTGTCCGGGAAAATGACAGTAACACGAACCGCGAAGAGCGTAGGGAGTGCTCCTGGTGTGTACAGGGTTAAAGTGGAAGCGCCTGCCGGAATCAAA GTTGATGTGAGTCCTAAAGTGCTGAGCTTCAGTAAAGTGGGTGAAGTGAAGAAGTACAGTGTGAGCCTGGAGGCGATGAGTACTGCTGGGAGTGGTTACC TGTTTGGAGGAATCACATGGTCGGATGGGAAGAATCATATGGTTAGGAGTCCGCTTGTCGTGCGGAAAGCAGCAAATGGAGTTGCTGAATCCATATGGAA AGCAGAGGAAAGAGGTTATTGCCGCTCCTCGCCGTTTACTTCGCCTCCGAGTACTACAGGCTACCATGGAAACCTCCGGGTGCGGGCGGCCCTAACTCCG CCCAATCACTTAAATAAATCTACCCCACCTTACCTCGACCCCGCTTTCCTCCACCATATCCTCCCTTCCATCTATCAGGTCGCCTTCAACCCATATCTCA TCCTCAAGAACATGGATTTGAGGCGCTTCTTCCTGTCGCCGTTCTACCATCTCGGCGAATCCCACTTGTTCTTCAACATGATGTCTCTGTTGTGGAAGGG CAGCCAGCTGGAGGCATCAATGGGGAGCATCGAGTTCGGCTCCATGGTCGCTACACTCCTCACCATGTCCCAAGGGATTACTCTGCTGCTAGCCAAGACT CTGATTTTCTTCGACTACCCAAAGCCATTCTACACTCAATACAGTGCCGGCTTCTCCGGAGTCTTGTTCGCAATGAAGGTCGTCCTCAACTCCGATTCTC CAGACTACACTCATGTCCATGGACTGACGGTCCCCACACGTTATGCTGCTTGGGCCGAACTTTTACTCATCCAGCTCGTCGCACCTGATTCCTCGTTCCT CGGCCACCTCGGTGGGATACTCGCCGGAATTCTGTACCTTAAGCTTCAGGGACGAAACACAGGGTTGGACCCTTTTGCTAGAATGGCGAGAGGGTTCATC CATATTGTGAAGTGGCCGTTTCGATTAGCGAGGGGGTTGTTTCATCGCAGTAATAGTCGGGGTCGTATCACTGGTCGGGGATCCACTGTTGGTGGTGGTG ATCGATCGAGGGACGGCCTGAGAGGTGTTTGGAGATGTGTAGCGTGTACTTATGATAATTCCGGCTGGTCGAGCGAGTGTGAGATGTGTGGAACTAGGCG GGGAGGGGTATCGGGTTCGGGGGATGGTGGTGAGGTTGGGGTTGAAGAGATTCGGAGGCGCAGGATTGAGAGGTTTGGGTATTGA
AA sequence Show only first row Show all	>Lus10014591 pacid=23170909 polypeptide=Lus10014591 locus=Lus10014591.g ID=Lus10014591.BGIv1.0 annot-version=v1.0 MRSTFRRVCCFAALLSLCILNSAYAADKATLLLFCRNSNGPLIDQDLDGDAMSETYHGVLASCMESNEEKAREAIFYSYSSRFNGFAASLEDVEAEQLES HPEVIAVLPNEVYQIQITSSWLFLGLENSAGTVPPESLWTKAKFGRDVIIGNLDTGVWPESPFFKDTGLGPIPSRWKGKCAVANGTTPPFKCNRKLIGAR AFNSASPRDVNGHGTHTLSTAGGSFVPGANFLGSAKGTAKGGSPGARVAAYKVCSDNGGCGSADILAGFDAAIQDKVDVITVSLGSNVPNDYVRDTIAIG SFHAVRSGIPVVCSAGNSGLDGSVSNVAPWILTVAASTLDRRFVSDVKLGNGKVYKGISFSSNTTPSKKFHPLINAVAAKAPGASEFNARYCNPGSLDPS KVKGKIVFCIRNGVDVQKSYVVEQAGGVGVVLANPSSGATGPQAHFIPTSAISKVDGDAVLKYISNTSSPVAYIIGYTEIGKVAAPVMAGFSSRGPNRIT PEILKPDVTAPGVYILAGYTEAKGPTGQSFDNRRIPYNIISGTSMSCPHVAGIVGLLKTLHPKWSPAAIRSAIITTANTMNNKGQPIQMESGTKANQFNY GAGHVTPNKAASPGLVYELNLTDNLNFLCYIGYTPQQIAVFHDKPYTCPQKTATSLSNLNYPSISVPNLSGKMTVTRTAKSVGSAPGVYRVKVEAPAGIK VDVSPKVLSFSKVGEVKKYSVSLEAMSTAGSGYLFGGITWSDGKNHMVRSPLVVRKAANGVAESIWKAEERGYCRSSPFTSPPSTTGYHGNLRVRAALTP PNHLNKSTPPYLDPAFLHHILPSIYQVAFNPYLILKNMDLRRFFLSPFYHLGESHLFFNMMSLLWKGSQLEASMGSIEFGSMVATLLTMSQGITLLLAKT LIFFDYPKPFYTQYSAGFSGVLFAMKVVLNSDSPDYTHVHGLTVPTRYAAWAELLLIQLVAPDSSFLGHLGGILAGILYLKLQGRNTGLDPFARMARGFI HIVKWPFRLARGLFHRSNSRGRITGRGSTVGGGDRSRDGLRGVWRCVACTYDNSGWSSECEMCGTRRGGVSGSGDGGEVGVEEIRRRRIERFGY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10014591 [exp]	0	1
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	2.2	0.9419
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10031983 [exp]	3.5	0.9237
AT3G51650			unknown protein		Lus10025250 [exp]	4.1	0.8920
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	4.7	0.9358
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Lus10011397 [exp]	8.9	0.9166
AT5G42060			DEK, chromatin associated prot...		Lus10032409 [exp]	9.4	0.8874
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	10.4	0.9093
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	11.3	0.9178
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10002533 [exp]	11.8	0.8978
AT5G09570			Cox19-like CHCH family protein...		Lus10007086 [exp]	16.2	0.8737

Compare expression of checked genes

Lus10014591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.