Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14450 573 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G26430 367 / 1e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 334 / 8e-113 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT3G27950 327 / 2e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54790 287 / 3e-94 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT4G01130 271 / 5e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 263 / 6e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 262 / 8e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G05180 244 / 9e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 236 / 1e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032094 [exp] 757 / 0 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 372 / 1e-127 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 336 / 6e-109 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003021 [exp] 289 / 4e-95 AT3G26430 385 / 4e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029980 [exp] 288 / 2e-94 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10036873 [exp] 280 / 2e-92 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012644 [exp] 281 / 7e-92 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029639 [exp] 279 / 2e-91 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029638 [exp] 278 / 3e-90 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342600 [exp] 620 / 0 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 367 / 2e-125 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G047900 [exp] 365 / 1e-124 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 346 / 2e-117 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 345 / 5e-117 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 337 / 8e-114 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 324 / 1e-108 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 291 / 5e-96 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.014G094100 [exp] 288 / 1e-94 AT4G01130 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G038800 [exp] 288 / 2e-94 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10014592 pacid=23170965 polypeptide=Lus10014592 locus=Lus10014592.g ID=Lus10014592.BGIv1.0 annot-version=v1.0 ATGGGTTCAGTTCCTTGTAGGGTTTTGGTATCTGGGTTCCTCCTGGTTTTCTGCGTTTTGGGCTCGGGAAATGCTGCTGCTTTGTTGCCGTGTGAATTCC CAGCCATCTACAACTTTGGAGACTCGAATTCAGACACTGGAGGAATATCAGCTGCATTTGTCCCAATCTCTGCTCCTTACGGCCAACATTTCTTCCGCAA GCCTGCTGGTCGAGACGCCGATGGCCGCCTCACTGTTGATTTCATTGCTGAGAGGCTAAAGTTGCCGTATTTGAGTGCATACTTGAACTCAATCGGGAGT AATTACAGGCATGGAGCGAATTTTGCAACTGGAGGGTCTACAATCAGGAGGCAGAATGAGACCATTTTCCAGTATGGGATTAGCCCTTTTGCTCTTGATA TGCAGATTGTTCAGTTTGATCAATTCAAAGCAAGAACCGCTGATCTCTACAACCAGGTGAAGGGAACTCCGGAGGCAGAGAAGCTTCCAAGGCCTGAGGA ATTCTCAAAGGCTCTCTACACATTCGACATCGGCCAGAATGATCTGTCTGTTGGTTTCAGGAAGAGTGCTGACCAGCTCAAAGCAGAATTGCCTGACATT GTTGAACAGCTAGCTTCTGCAGTCAAACACTTGTATGAACAAGGAGGAAGGTCATTCTGGATCCACAACACAGGTCCATTCGGTTGCCTGCCCGTCAACT TATTCTACGTTTCGAATCCAGCACCTCCGGGTTATCTCGACGAGCTCGGATGTGTCAAGGCTCAGAATGAAATGTCAATTTTATTCAACAAGCAGCTCAA GGAAAGAGCGACAAGCCTGAGAAATGAGCTAAAGGAAGCTGCAATTGTCTATGTTAATGTTCATGCTGCTAAATTCGAACTCATTGCCAATGCCAAGAAG CTAGGTTTCCCTGATCCGTTGAAGGTTTGCTGCGGATACCACGAGAAGTACGATCACGTTTGGTGTGGAAACAAAGGGAAGGTGAATAATGGAAGTGAAG TGTATGGAGCTTCCTGTAAAGACCCTTCAGTGTATGCTAGCTGGGATGGTGTTCATTACACTGAGGCTGCAAACAAATGGGTGGCTGATCATACTCATAA CGGCTCCTTGACTGATCCACTGACTCCGATTACTCGAGCATGCCATAGGCTGTGA
AA sequence Show only first row Show all	>Lus10014592 pacid=23170965 polypeptide=Lus10014592 locus=Lus10014592.g ID=Lus10014592.BGIv1.0 annot-version=v1.0 MGSVPCRVLVSGFLLVFCVLGSGNAAALLPCEFPAIYNFGDSNSDTGGISAAFVPISAPYGQHFFRKPAGRDADGRLTVDFIAERLKLPYLSAYLNSIGS NYRHGANFATGGSTIRRQNETIFQYGISPFALDMQIVQFDQFKARTADLYNQVKGTPEAEKLPRPEEFSKALYTFDIGQNDLSVGFRKSADQLKAELPDI VEQLASAVKHLYEQGGRSFWIHNTGPFGCLPVNLFYVSNPAPPGYLDELGCVKAQNEMSILFNKQLKERATSLRNELKEAAIVYVNVHAAKFELIANAKK LGFPDPLKVCCGYHEKYDHVWCGNKGKVNNGSEVYGASCKDPSVYASWDGVHYTEAANKWVADHTHNGSLTDPLTPITRACHRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	0	1
AT3G25700			Eukaryotic aspartyl protease f...		Lus10041494 [exp]	1.7	0.8689
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10029156 [exp]	2.0	0.8416
AT1G74160			unknown protein		Lus10034678 [exp]	4.9	0.8357
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	4.9	0.8151
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	8.5	0.8136
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	8.9	0.8339
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	9.7	0.8299
AT1G74160			unknown protein		Lus10034677 [exp]	10.0	0.8093
AT3G13510			Protein of Unknown Function (D...		Lus10013410 [exp]	11.2	0.7887
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10018724 [exp]	13.7	0.7935

Compare expression of checked genes

Lus10014592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.