Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27460 385 / 5e-136 AtSGF29a SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2) AT5G40550 353 / 3e-123 AtSGF29b SaGa associated Factor 29 b, SGF29 tudor-like domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032093 [exp] 372 / 6e-128 AT3G27460 282 / 8e-93 SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342700 [exp] 385 / 6e-136 AT3G27460 374 / 9e-132 SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF07039 [flax] [poplar] DUF1325 SGF29 tudor-like domain
Representative CDS sequence Show only first row Show all	>Lus10014593 pacid=23170944 polypeptide=Lus10014593 locus=Lus10014593.g ID=Lus10014593.BGIv1.0 annot-version=v1.0 ATGTCGTCTCCGGACATCTCCGGAATATTGGACAATTCAAGGGAGCTCGATCGGCTAAGGAAGGAACAAGAGGAAATCCTCTCGGAGATCAACAAGATGC ATAAGAAGCTTCAAGCAACTCCGGAGGTGGTTGAAAAGCCTGGCGATAACTCATTACCAAAGCTAAAACAGTTATATATGCAGGCCAGGGAATTGTCGGA AATTGAAATAAATGTTTCTAATACATTGTTGAGTCAATTGGATGCTCTCTTGCCATCTGGACCTCAAGGACAGCAGAGAAGGAGAATCGAAGGTAATGAA CAGAAAAGGAAAAGAATGAAAGCCGATTCAGATATCCCTAGGCTTTCGCCTTCAATGAGAAATCAACTTGATGCTTGTGCCAGCTTGATAGGTGAACAGG TTGCGGCCAGAGTTACGGGAGATGATGCTGAAAAGGATGAATGGTTCGTTGTAAAGGTCATGCATTTTGATAGAGACAAAAGAGAGAAGTACAGGCTACC GATGTCGTGTATTATTCCTTTCCCGAAGCGAAACGATCCAGCAAGTGCACCGGATTTCCCTCCAGGAAGGCATGTGTTGGCTGTCTATCCAGGAACAACA GCACTCTATAAGGCAACTGTTGCCAATCCCCTCAGAAAGGTTGACTCTTTGAAACAAACACTACAGATCTCAAATGTTAAAGTTACAAGTGACTTATATG TTGCTATCTTTTGCATGATTGGGTTACCTCAACCAAAATGCTATTTTCATCGGTACAGCGAAGATCAGACGAGTAATTATCTGCTGGAGTTTGATGATGA CGAAGAAGACGGAGCTTTGCCTCAAAGAACAGTGCCATTCCACAAGGTTGTACCTTTACCAGACGGACATCGGCAATGA
AA sequence Show only first row Show all	>Lus10014593 pacid=23170944 polypeptide=Lus10014593 locus=Lus10014593.g ID=Lus10014593.BGIv1.0 annot-version=v1.0 MSSPDISGILDNSRELDRLRKEQEEILSEINKMHKKLQATPEVVEKPGDNSLPKLKQLYMQARELSEIEINVSNTLLSQLDALLPSGPQGQQRRRIEGNE QKRKRMKADSDIPRLSPSMRNQLDACASLIGEQVAARVTGDDAEKDEWFVVKVMHFDRDKREKYRLPMSCIIPFPKRNDPASAPDFPPGRHVLAVYPGTT ALYKATVANPLRKVDSLKQTLQISNVKVTSDLYVAIFCMIGLPQPKCYFHRYSEDQTSNYLLEFDDDEEDGALPQRTVPFHKVVPLPDGHRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10014593 [exp]	0	1
AT4G16380			Heavy metal transport/detoxifi...		Lus10001913 [exp]	1.4	0.8320
AT5G43100			Eukaryotic aspartyl protease f...		Lus10018709 [exp]	6.2	0.8254
AT5G19670			Exostosin family protein (.1)		Lus10034951 [exp]	7.5	0.7914
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	13.7	0.7835
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	15.0	0.7619
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10027686 [exp]	19.4	0.7329
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10020979 [exp]	19.9	0.7248
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	19.9	0.7622
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10034131 [exp]	22.8	0.7219
AT5G53340			Galactosyltransferase family p...		Lus10038830 [exp]	25.4	0.7319

Compare expression of checked genes

Lus10014593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.