Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02330 902 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 502 / 1e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 492 / 1e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 496 / 3e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 468 / 2e-153 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 472 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 453 / 4e-148 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 444 / 5e-144 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 441 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 441 / 7e-142 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032091 [exp] 1488 / 0 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 509 / 5e-168 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 503 / 1e-165 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 499 / 5e-163 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 466 / 3e-152 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030249 [exp] 454 / 8e-150 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 456 / 2e-149 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009913 [exp] 458 / 7e-148 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 447 / 3e-146 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G111300 [exp] 1047 / 0 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 535 / 3e-178 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 533 / 2e-176 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 519 / 6e-171 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 504 / 5e-165 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 491 / 3e-162 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 492 / 6e-161 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 478 / 7e-157 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 466 / 2e-152 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 460 / 8e-151 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014594 pacid=23170939 polypeptide=Lus10014594 locus=Lus10014594.g ID=Lus10014594.BGIv1.0 annot-version=v1.0 ATGCTGGCTGCGGTAAGATGGGGGGTTGCAAGGGAGCTTTTCGACAAGATGCCTCTCCGAGATGTTGTGTCGTGGAATTCGATGATTTCCGGGTTTTTGC AGAACGGGGAGCATGGAAAGGCAATTGACGTTGTCTTGGACATGGGGAGATCAGATGTGAAGTATGACAGAACAACTTTTGCTGTTGCTCTAAAAGCTTC TGCTGGTTTAGAAAACTGTTATGTGGGTGTTCAGCTTCATGGACTGGCAGTTCGGCTGGGACTCGTTAGTGATGTCTATACAGGTAGTGCTATGCTGGAT ATGTATGCAAAATGTAACAGGTTAGATGATTCGTTTAAGGTATTCAGAGAGATTCCAGAGAAAAACTGGGTTTCATGGAGTGCCATGATTGCTGGTTTCA TTCAAAACAATAGATTGTTCGAGGGTTTGGAGCTGTTTAACGATATGCAAAGGACTGGAATAGGTGTTAGCCAATCTATCTACGCCACGGTTTTCAGATC ATGTGCAGGGTTATCTGCATTGGAAATCGGGTCTCAATTTCATTGCCACTCGATCAAAAGTGATTTTGGTGAAGATGTGATTGTGGGAACTGCAACACTG GACATGTATGCAAAATGTGGAAGTATGGGAGATGCTTATAAGTTATTTAACTCGATGCGAACGCATAATTTGCAGTCATATAATGCTATTATTGTTGGGT ACGCGAGAAGTGGGCAAGGTTCTCAAGCTAGGCTTTTATTTCGACGCCTGTTGAAGTCTGGCCTTGGTTTCAATGAAATTAGTCTATCAGGAGCATTCTG TGCTTGTGCATGGATTAGAGAAAAGTCGTTGGGACTCCAATTGCATGGGCTGACGATGAAGACTGTTTTTAACACCGATGTTTGTGTGGCGAATGCTGTT CTTGACATGTACGGTAAATGTGGAGCTTTAGTGGAAGCTACCCGTGTATTTGATGAGATGATGTATCGAGATGCTGTATCCTGGAACGCCATTATTGCAG CTAATGAGCAGAATGGCAGCGAAGAAGAAGACACTCTTCCAGTTTTCACGTCAATGCTCAGTTTCGGAATGGAACCTGACGAATTCACCTATGGCAGTGT ATTGAAAGCATGTGCAGGGAAGCAATGTCTAAACAGTGGAAGGGAAATCCACGCTAGAATCGTCAAATCTGGACTGGGGTGGGAACCATTTGTCGGGGGA GCTCTCGTTGACATGTACTGCAAATGTGGAGTGATAAAAGAGGCGGAGAAAATTCACGACAGAACTTATCCGCAGTCGATGGTTTCGTGGAACGCAATTG TTTCCGGATTCTCGCTGCTGCAACAGAGCGAGGAAGCTCAAAATTTTTTTCTTCACATGTTGGAGGCCGGTGTAAAGCCTGACAATTTCACTTATGCGAC GGTTCTTGATACCTGTGCCGACTTAGCTACAGTTGGTTTGGGAATGCAGATTCATGGCCAGGTCATAAAGCAGCAACTGCAGTCTGACGTGTACATATCC AGTACACTAGTGGACATGTATTCCAAATGCGGAAAGCTGCTAGATTCGGAGCTAATGTACGAGAAAGCACCTAAGAAGGACCTTGTGGCATGGAACAGTC TGATATGCGGATATTCGCAACACGGTCATGGAGAAAAGGCTCTAGAAATCTTCAAGATGATGAGACCCGAGAATGTAAATCCGAACCATGCAACTTTTCT GTCAGTTCTTCGCGCATGTGCACATAAAGGACTTCTTGATACAGGGTTGCTCTATTTTGACATTATGCAAACCGAGTATCGTTTAGATCCTGAACTGGAG CATTATTCATGCATTGTCGATCTGTTAGGGAGATCGGGGAGGATAGTTGATGCTTTGAAGGTTATTGAAGAAATGCCATTTGAAGCTGATGCTGTTATTT GGAGAACTCTGCTAAGCATTTGCAAATTACATGGAGAGGTCGAGATTGCAGAAAAGGCTGCGACTTCGATATTGCGATTAGAGCCGGATGACTCTTCTGC TTATATTCTTCTGTGCAATATTTATGCTGATGCTGGGATGTGGGGTAAGGTTGGAGAGATGAGGAGGAGAATGAAGCAGAGTAGGCTGAAGAAGGAACCG GGTTGCAGCTGGATTGAGATTAAAGATGAAGTGCATCCATTTGTTAGTGGAGACAAGTCGCAATCGAGATGGGAAGAGATATATGAGAACATCGATATGT TGGTTAATGAGATGAAATGGGATGGATATGTACCAGATGATTTGTTCAGAGATGAAGTGTTAAGTAACTATAGTCTCTAG
AA sequence Show only first row Show all	>Lus10014594 pacid=23170939 polypeptide=Lus10014594 locus=Lus10014594.g ID=Lus10014594.BGIv1.0 annot-version=v1.0 MLAAVRWGVARELFDKMPLRDVVSWNSMISGFLQNGEHGKAIDVVLDMGRSDVKYDRTTFAVALKASAGLENCYVGVQLHGLAVRLGLVSDVYTGSAMLD MYAKCNRLDDSFKVFREIPEKNWVSWSAMIAGFIQNNRLFEGLELFNDMQRTGIGVSQSIYATVFRSCAGLSALEIGSQFHCHSIKSDFGEDVIVGTATL DMYAKCGSMGDAYKLFNSMRTHNLQSYNAIIVGYARSGQGSQARLLFRRLLKSGLGFNEISLSGAFCACAWIREKSLGLQLHGLTMKTVFNTDVCVANAV LDMYGKCGALVEATRVFDEMMYRDAVSWNAIIAANEQNGSEEEDTLPVFTSMLSFGMEPDEFTYGSVLKACAGKQCLNSGREIHARIVKSGLGWEPFVGG ALVDMYCKCGVIKEAEKIHDRTYPQSMVSWNAIVSGFSLLQQSEEAQNFFLHMLEAGVKPDNFTYATVLDTCADLATVGLGMQIHGQVIKQQLQSDVYIS STLVDMYSKCGKLLDSELMYEKAPKKDLVAWNSLICGYSQHGHGEKALEIFKMMRPENVNPNHATFLSVLRACAHKGLLDTGLLYFDIMQTEYRLDPELE HYSCIVDLLGRSGRIVDALKVIEEMPFEADAVIWRTLLSICKLHGEVEIAEKAATSILRLEPDDSSAYILLCNIYADAGMWGKVGEMRRRMKQSRLKKEP GCSWIEIKDEVHPFVSGDKSQSRWEEIYENIDMLVNEMKWDGYVPDDLFRDEVLSNYSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10014594 [exp]	0	1
AT1G71420			Tetratricopeptide repeat (TPR)...		Lus10006073 [exp]	3.5	0.8343
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	5.5	0.8946
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	13.9	0.8577
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	19.2	0.8488
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	23.5	0.8254
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10031994 [exp]	29.2	0.8201
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10024831 [exp]	29.3	0.8454
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	29.4	0.8501
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	29.7	0.8376
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	31.3	0.8383

Compare expression of checked genes

Lus10014594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.