Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14250 446 / 2e-150 CSN3, FUS11, COP13 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) AT4G25440 267 / 1e-81 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G51980 266 / 2e-81 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G49200 206 / 3e-59 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G40880 203 / 2e-57 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT1G24530 74 / 1e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 72 / 5e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 69 / 4e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 67 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 66 / 4e-11 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032065 [exp] 773 / 0 AT5G14250 503 / 7e-177 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10022337 [exp] 618 / 0 AT5G14250 570 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10032066 [exp] 529 / 0 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10041586 [exp] 514 / 7e-175 AT5G14250 450 / 2e-154 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10032062 [exp] 426 / 5e-144 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10021656 [exp] 394 / 1e-129 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10021648 [exp] 343 / 4e-110 AT4G25440 321 / 1e-105 zinc finger WD40 repeat protein 1 (.1) Lus10034716 [exp] 303 / 1e-96 AT5G51980 217 / 5e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014598 [exp] 301 / 2e-96 AT4G25440 134 / 2e-36 zinc finger WD40 repeat protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334200 [exp] 562 / 0 AT5G14250 507 / 1e-179 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.017G066300 [exp] 546 / 0 AT5G14250 522 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.015G137200 [exp] 270 / 1e-82 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.012G134800 [exp] 269 / 4e-82 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G077800 [exp] 260 / 5e-78 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G109500 [exp] 71 / 1e-12 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 69 / 3e-12 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 63 / 4e-10 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 63 / 5e-10 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 62 / 5e-10 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10014595 pacid=23170975 polypeptide=Lus10014595 locus=Lus10014595.g ID=Lus10014595.BGIv1.0 annot-version=v1.0 ATGGAGAAGCGGAACGAAGCAAGCAAGTGCAGAATTAAGGAGGAGGCGCAGAAGCTACGGCAGCAAACTCCGATTGATCGGAAGCGAAAAATCGAAATCT CCGGTACAGAGCCGACGAGTTCCACGACTATGAACGGAGTGGAATCTTTGGTGAAGCGAATCCAGGGGCTGTCGAGCAGCGCTAACGACCTGGCCGTGCT TCACACTCACTTGAAACAAGCAGGCGAGGCTCTTTATCGCGACTCTCGTAGTTTGCGTCCTTACCTTGATCAGCTTGACCCTACGGTCCATTCTCTCGGA TACCTCTATCTCCTAGATGCTTGTACTTCTGATTCAGTATCCAGGGAGCAGGCGGCGAGTCTGGTTTTAATTTCTGCAAGGTTCATCACCTCGTGCAACA CTGAGCAAATTCAGTTGTCAGTAAATAAATTCATAGCCATTTGCAAGAAATTCAAGGATTTAGTTTTGCTAATCGATGCACCGCTACGTGGGGTTGCTCC GTTGCTGACAGCCGTGCGAAAGCTTCAATCTTCTTCAGAACATTTGACGTGCTTGCATCCAGATTTTCTTGAACTTTGCTTGTTGACAAAGTGCTATAAA ACTGGGCTTTCACTTCTCGAAGACGATATTTTTGAAGTTGATCAGCCGAGGAACCTGTTTCTTTACTGTTATTACGGAGGGATGATCTGCATTGGGCAAA AGGATTTTAAGAAAGCCTTGGAGCTTCTACACAGTGTTGTGACTGCGCCAATGTCTCCGCTAAGTGCTATAGCTGTTGAAGCATACAAGAAGTATGCATT AGTGTCTCTCATTCACCATGGACAATTCTCATCCAGTCTTCCCAAGTACACTTCAAGTTCTGCTCAGAGAAATCTAAAGAATTTCTGTCAGGACAATAAT CTGGGACTAGTGAAACAGGTTGTATATTCCATGTATAAGAGAAATATACAGAGGCTGACACAGACGTACTTGACCCTCTCCCTGCAAGATATAGCTGATA CTGTTCAACTCAGGAGTGCTAAGGAGGCAGAAATGCACGTCCTTCGAATGGTGGCTCCTGATATCCAAAATGGTGAAATATTTGCAACAATCAACCAGAG AGATGGTATGGTAAGCTTTCTTGAGGATCCTGAGCAGTACAAGACAGGTGGGATGGTCGATAATATCGACAGTTCCATTCAAAGGTTGATTAAACTGTCG ACTAAGTTGACAACAATGGATAATCAGATGTCATGCCATCCATTATACCTAGGAAAGGTAACGTTATCCGTGGTCTACCTTGATTCACCTACCTACAATT GCTTAGGTGATTTTGGAACATTGGAAGTGACTGTTGGCTCAATTTTTGTTGTGGCGCAGGTCGGGAAGGAGCGACAGAGGTTCGACTTCGACGACCTAGA CTCAGTTCCTCATAGTGATAAGCTCTTCTCAGGCAGCGGTGATGGTGTCGTTCAAGCATGGGATTGCAACAGTGGTCAGGTTGCAGGTACGTTAAATGTC GGTGGGAAGATTGGGTGTTTGGTTATAGAAGGCGATCTTCTATATGTTGGATTGCCAAATATGGTCAAGGCTCGGGACCTTTGCTCAGGTGTTGAGTGCA CTCTCACCGGTCCAACTGGCCAAATATACGCATTGGCAATTGGTATGGGGGTTATCTTCGCTGGAGCTCAAGATGGTGTAATTTACAGTTGGAAGACTAC TGCCGACGAGCAAGGAAACTTGTTCCAGCCAGCTGCAGCACTAATCGGGCACACAAGCGCAGTTGTTTCCCTTAAATTTGAAGGTGGAAGGTTGTTCTCC GGCTCCATGGATGGAACGATCAAAGTCTGGGACGGCAGCACTTTCCAGTGCCTGGAAACTTTCAAGGGGCATGACGAAGCAGTGCTGTCTCTACTCTGCT TCTCCGAGTACCTTCTATCCTGCTCCCTGGATTGCAAGATCAAAGTATGGGGCCGCAGCAATGGAGAAGGGAGGTTTGAATGGATGTATACCCATGAAGA AGCAGACGGTGCTCTGGCCTTGTGTGGAGTCGATCTGAATGGGAAGCCGATGTTGCTATGCTCCTGGAACAACGATTCAGTCGGTGTGTACGAGCTGCCA TCGTTTGCAGAGAAGGGAAGAATGTACAGAAAAGGTGAAGTGAGGAGCATTGGAGGAGGTCGTGATGGGATGGTATTCACTGGAGATGCTGCTGGTCTTG TTACTGTTTGGAGACTAACACACCAAGTGGAAATGGAGCAGTAG
AA sequence Show only first row Show all	>Lus10014595 pacid=23170975 polypeptide=Lus10014595 locus=Lus10014595.g ID=Lus10014595.BGIv1.0 annot-version=v1.0 MEKRNEASKCRIKEEAQKLRQQTPIDRKRKIEISGTEPTSSTTMNGVESLVKRIQGLSSSANDLAVLHTHLKQAGEALYRDSRSLRPYLDQLDPTVHSLG YLYLLDACTSDSVSREQAASLVLISARFITSCNTEQIQLSVNKFIAICKKFKDLVLLIDAPLRGVAPLLTAVRKLQSSSEHLTCLHPDFLELCLLTKCYK TGLSLLEDDIFEVDQPRNLFLYCYYGGMICIGQKDFKKALELLHSVVTAPMSPLSAIAVEAYKKYALVSLIHHGQFSSSLPKYTSSSAQRNLKNFCQDNN LGLVKQVVYSMYKRNIQRLTQTYLTLSLQDIADTVQLRSAKEAEMHVLRMVAPDIQNGEIFATINQRDGMVSFLEDPEQYKTGGMVDNIDSSIQRLIKLS TKLTTMDNQMSCHPLYLGKVTLSVVYLDSPTYNCLGDFGTLEVTVGSIFVVAQVGKERQRFDFDDLDSVPHSDKLFSGSGDGVVQAWDCNSGQVAGTLNV GGKIGCLVIEGDLLYVGLPNMVKARDLCSGVECTLTGPTGQIYALAIGMGVIFAGAQDGVIYSWKTTADEQGNLFQPAAALIGHTSAVVSLKFEGGRLFS GSMDGTIKVWDGSTFQCLETFKGHDEAVLSLLCFSEYLLSCSLDCKIKVWGRSNGEGRFEWMYTHEEADGALALCGVDLNGKPMLLCSWNNDSVGVYELP SFAEKGRMYRKGEVRSIGGGRDGMVFTGDAAGLVTVWRLTHQVEMEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10014595 [exp]	0	1
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	7.0	0.9228
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10030685 [exp]	14.3	0.9161
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	15.0	0.9136
AT4G19160			unknown protein		Lus10038244 [exp]	16.6	0.9197
AT5G66930			unknown protein		Lus10019643 [exp]	18.8	0.9162
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	20.1	0.9147
AT2G44270		ROL5	repressor of lrx1 (.1.2)		Lus10009739 [exp]	25.0	0.9081
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	35.4	0.9113
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10025837 [exp]	36.4	0.9157
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10033471 [exp]	37.2	0.8847

Compare expression of checked genes

Lus10014595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.