Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14240 314 / 1e-108 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032064 [exp] 409 / 4e-146 AT5G14240 370 / 7e-131 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066200 [exp] 198 / 4e-63 AT5G14240 214 / 2e-69 Thioredoxin superfamily protein (.1) Potri.001G334100 [exp] 134 / 3e-38 AT5G14240 175 / 2e-54 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02114 [flax] [poplar] Phosducin Phosducin
Representative CDS sequence Show only first row Show all	>Lus10014596 pacid=23170870 polypeptide=Lus10014596 locus=Lus10014596.g ID=Lus10014596.BGIv1.0 annot-version=v1.0 ATGGCGGATTATCACTTTGTGTACAAGGATGTCGATGGAACGTCGACTCAGTGGGACGATATTCAGAGGAAGCTAGGGAATTTGCCCGAGAAGGCGCCGG CGTTCAAGCCTCCCGCTTATACTCCAGCTCCTGATGAAGATTCGATCCCCAAGGATAAGGCGTGGATCGACGAGAGGACTGAAGAGGACCTTGAAGACAT GGAGGATGAGCTTGATGATGATCGTTTCCTGGAAGATTACAGGAAGAAGAGGTTGGCTGAGATGAAAGAAGCAGCTAAAGTTGCCAAGTTTGGATCAGTG GTCCCTATTTCAGGGTCAGATTTCGTGAGGGAGGTTTCACAAGCTCCACCTGAAGTTTGGGTCGTGGTGCTTCTCTACAAGGACGGGTATCAAGAATGCG GGGTGTTGCTTGGATGTCTGGAAGAATTGGCGAAGAGATATCCTGCCACAAAGTTTGTTAAGATAATCTCTACTGACTGTATTCCAAACTACCCAGATCG AAATCTCCCCACTTTATTGGTCTACAACAATAGTGCAGTGAAGGCAAACTATGTAGGGATGCGAAGTTTTGGCAGGAGATGTACCCCAGAAAGCGCTGAA TCAGATATCGCCATGCCTAGGCTATGCTCTAATACATTTAGTCTGTGTTCAGGTGTAGCATTGGTTCTATGTCAATCAGACCCAGTGCTGAATGACGGCC AGAGTGGGAGCGATGCATCAAGCAAAGCTGTAATGGATGGCGTTAGGAGGCGTATCATCGAGCGGGTTGTGAAGGACCACGAAGAACGTGGCGATGATGA CGGTTATTCTAGTGACTAG
AA sequence Show only first row Show all	>Lus10014596 pacid=23170870 polypeptide=Lus10014596 locus=Lus10014596.g ID=Lus10014596.BGIv1.0 annot-version=v1.0 MADYHFVYKDVDGTSTQWDDIQRKLGNLPEKAPAFKPPAYTPAPDEDSIPKDKAWIDERTEEDLEDMEDELDDDRFLEDYRKKRLAEMKEAAKVAKFGSV VPISGSDFVREVSQAPPEVWVVVLLYKDGYQECGVLLGCLEELAKRYPATKFVKIISTDCIPNYPDRNLPTLLVYNNSAVKANYVGMRSFGRRCTPESAE SDIAMPRLCSNTFSLCSGVALVLCQSDPVLNDGQSGSDASSKAVMDGVRRRIIERVVKDHEERGDDDGYSSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14240			Thioredoxin superfamily protei...		Lus10014596 [exp]	0	1
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10025797 [exp]	4.5	0.8266
AT2G36170			Ubiquitin supergroup;Ribosomal...		Lus10022695 [exp]	7.2	0.8279
					Lus10003030 [exp]	7.3	0.8089
AT4G20150			unknown protein		Lus10036250 [exp]	7.5	0.8620
AT1G67420			Zn-dependent exopeptidases sup...		Lus10037015 [exp]	10.5	0.8354
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10019531 [exp]	14.1	0.8523
AT3G13780			SMAD/FHA domain-containing pro...		Lus10015611 [exp]	20.7	0.8071
AT3G02645			Plant protein of unknown funct...		Lus10016396 [exp]	25.7	0.8021
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10014198 [exp]	27.6	0.8117
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10011491 [exp]	37.2	0.8059

Compare expression of checked genes

Lus10014596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.