Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01790 270 / 5e-93 Ribosomal protein L13 family protein (.1.2) AT1G78630 75 / 3e-16 EMB1473 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032063 [exp] 365 / 1e-129 AT3G01790 308 / 3e-107 Ribosomal protein L13 family protein (.1.2) Lus10005553 [exp] 79 / 8e-18 AT1G78630 332 / 8e-116 embryo defective 1473, Ribosomal protein L13 family protein (.1) Lus10041940 [exp] 66 / 8e-13 AT1G78630 317 / 4e-110 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066000 [exp] 300 / 9e-105 AT3G01790 266 / 3e-91 Ribosomal protein L13 family protein (.1.2) Potri.001G334000 [exp] 287 / 1e-99 AT3G01790 299 / 2e-104 Ribosomal protein L13 family protein (.1.2) Potri.011G106100 [exp] 83 / 2e-19 AT1G78630 342 / 3e-120 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.001G384600 [exp] 83 / 2e-19 AT1G78630 351 / 1e-123 embryo defective 1473, Ribosomal protein L13 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00572 [flax] [poplar] Ribosomal_L13 Ribosomal protein L13
Representative CDS sequence Show only first row Show all	>Lus10014597 pacid=23170955 polypeptide=Lus10014597 locus=Lus10014597.g ID=Lus10014597.BGIv1.0 annot-version=v1.0 ATGGCGACCCAAGCAGCTACTGCTTTCAATGGCAACCTAAAGAAAGCACTTGCTGGAATTAAACGTATCAAGCTTGATGGTCTGCGGTGGAGAGTCTTTG ATGCTAAAGGCCAGGTACTCGGCCGATTAGCATCTCAGCTATCAATTGTTCTTCAAGGCAAGGACAAGCCAACATATGCACCTAATCGTGACGATGGAGA TATGTGCATTGTCGTTAATGCAAAGGATATTGCAGTTACAGGACGGAAAATGACCGATAAGGTTTATCACTGGCATACAGGGCAAGTATCCACCTATATA GGGCATCTGAAGGAAAGGACCTTAAAAGACCAGATGGCCAAGGACCCAACAGAAGTCATTCGCAAAGCTGTGATGCGAATGCTCCCGAGAAATAAATTGC GTGATGACAGGGATCTAAAGCTGAGGATTTTCGCAGACGGTGAGCACCCCTTCCATGACCGGCCAGTTGAACCATATGTGATGCCTCCCAGGACAGTTAG AGAGATGCGACCACGTGCCAGACGAGCCATGGTTCGAGCTGAGAAAAAGGCTGAGCTACAAGCTCAGGGCGGCAGCAATACCAGGAAACATAGGAAGAAG GGAGTTGAGGAGCAGGAAACCGCCTGA
AA sequence Show only first row Show all	>Lus10014597 pacid=23170955 polypeptide=Lus10014597 locus=Lus10014597.g ID=Lus10014597.BGIv1.0 annot-version=v1.0 MATQAATAFNGNLKKALAGIKRIKLDGLRWRVFDAKGQVLGRLASQLSIVLQGKDKPTYAPNRDDGDMCIVVNAKDIAVTGRKMTDKVYHWHTGQVSTYI GHLKERTLKDQMAKDPTEVIRKAVMRMLPRNKLRDDRDLKLRIFADGEHPFHDRPVEPYVMPPRTVREMRPRARRAMVRAEKKAELQAQGGSNTRKHRKK GVEEQETA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01790			Ribosomal protein L13 family p...		Lus10014597 [exp]	0	1
AT3G05130			unknown protein		Lus10002255 [exp]	3.2	0.8644
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10015029 [exp]	3.2	0.8749
AT5G41970			Metal-dependent protein hydrol...		Lus10000877 [exp]	4.4	0.8844
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	7.5	0.8727
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10014210 [exp]	8.1	0.8510
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Lus10020541 [exp]	11.7	0.8612
AT3G18600			P-loop containing nucleoside t...		Lus10038950 [exp]	11.8	0.8587
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	12.6	0.8666
AT1G05730			Eukaryotic protein of unknown ...		Lus10025588 [exp]	14.8	0.7877
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	16.4	0.8158

Compare expression of checked genes

Lus10014597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.