Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25440 133 / 4e-36 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G51980 131 / 4e-35 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G49200 103 / 3e-25 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G40880 102 / 2e-24 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT1G24530 43 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 42 / 0.0005 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014612 [exp] 523 / 0 AT5G40880 131 / 3e-35 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) Lus10032062 [exp] 436 / 4e-155 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10014595 [exp] 293 / 3e-94 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10032066 [exp] 272 / 2e-89 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10021656 [exp] 213 / 1e-65 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10004085 [exp] 199 / 9e-65 AT4G25440 145 / 1e-42 zinc finger WD40 repeat protein 1 (.1) Lus10001652 [exp] 188 / 2e-59 AT5G51980 192 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021655 [exp] 188 / 2e-57 AT4G25440 169 / 3e-48 zinc finger WD40 repeat protein 1 (.1) Lus10021640 [exp] 175 / 3e-54 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077800 [exp] 148 / 6e-41 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G137200 [exp] 139 / 3e-38 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.012G134800 [exp] 137 / 3e-37 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.009G109500 [exp] 50 / 1e-06 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 48 / 3e-06 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 45 / 3e-05 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G079600 [exp] 42 / 0.0003 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.001G022900 [exp] 41 / 0.0006 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 41 / 0.0008 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 40 / 0.001 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10014598 pacid=23170888 polypeptide=Lus10014598 locus=Lus10014598.g ID=Lus10014598.BGIv1.0 annot-version=v1.0 ATGGTTGTAATCACCGACTCCTCCGGGCGAATTAGGGTTTCTGGACAAAATCAGAGGAATAACGGGATCGTCTGTCGATATTGGAAACAGGCGAGGTGTG ATCGGAACCCCTGTAGGTTCCTCCACGAAGACTCCCCGTCATCTTCGGCGACCTACTACTCATCACAGCCTCGATCCAATGTTTACGTTCGCAGATCTCA GAGTAAACCCCCGTCTGCGCCTATCGGTGATCACCAGAGAAATTCCCAGGCTACTCCTCAGAAACCGAAAGTTGTCGATGAGACCGCTCAAGACGATCGG AAGAGCAAAGAGACGGCTTGTCGAGAGTGGATCTCCGGGGATTGCTTTAGAGGAGAAGAATGCAAGTTTTCACACGCTTGGTTCCGTGGAGATGGATTGT CGATGATGGGACGGCTTGATGGGCATGTCTGGGATGGCAGCACTTTCCAGTGCCTAGAGACTTTCAAGGGGCATGACCAAGCAGTGATGTCTCTACTCTG CTTCTCGGAGTACCTTCTATCCTGCTCCCTGGATTGCAAGATCAAAGTATGGGGCCGCAGCAATGGAGAAGGGAGGTTTGAATGGATGTATACCCATGAA GAAGCAGACGGTGCTCTGGCCTTGTGTGGAGTCGATCTGAATGGGAAGCCGATGTTGCTATGCTCCTGGAACAACGATTCAGTCGGTGTGTACGAGCTGC CATCGTTTGCAGAGAAGGGAAGAATGTACAGAAAAGGTGAAGTGAGGAGCATTGGAGGAGGTCGTGATGGGATGGTATTCACTGGAGATGCTGCTGGTCT TGTTACTGTTTGGAGACTAACACACCAAGTGGAAATGGAGCAGTAG
AA sequence Show only first row Show all	>Lus10014598 pacid=23170888 polypeptide=Lus10014598 locus=Lus10014598.g ID=Lus10014598.BGIv1.0 annot-version=v1.0 MVVITDSSGRIRVSGQNQRNNGIVCRYWKQARCDRNPCRFLHEDSPSSSATYYSSQPRSNVYVRRSQSKPPSAPIGDHQRNSQATPQKPKVVDETAQDDR KSKETACREWISGDCFRGEECKFSHAWFRGDGLSMMGRLDGHVWDGSTFQCLETFKGHDQAVMSLLCFSEYLLSCSLDCKIKVWGRSNGEGRFEWMYTHE EADGALALCGVDLNGKPMLLCSWNNDSVGVYELPSFAEKGRMYRKGEVRSIGGGRDGMVFTGDAAGLVTVWRLTHQVEMEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10014598 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Lus10029711 [exp]	1.0	0.6955
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	24.8	0.6890
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10015912 [exp]	77.1	0.6163
AT1G76270			O-fucosyltransferase family pr...		Lus10013234 [exp]	95.0	0.6104
AT1G52190			Major facilitator superfamily ...		Lus10037896 [exp]	169.4	0.5802
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	197.4	0.5728
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10006066 [exp]	206.4	0.5622
AT3G42170			BED zinc finger ;hAT family di...		Lus10005558 [exp]	229.1	0.5558

Compare expression of checked genes

Lus10014598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.