Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01780 1835 / 0 TPLATE ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032067 [exp] 2172 / 0 AT3G01780 1922 / 0.0 ARM repeat superfamily protein (.1) Lus10014611 [exp] 116 / 2e-30 AT3G01780 82 / 2e-19 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334300 [exp] 1921 / 0 AT3G01780 1859 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014599 pacid=23170962 polypeptide=Lus10014599 locus=Lus10014599.g ID=Lus10014599.BGIv1.0 annot-version=v1.0 ATGGACATACTCTTCGCTCAGATCCAAGCGGACCTTCGCTCCAACGATGCTCTCCGCCAGTCCGGCGCTCTACTCCAATCTCTCCAGCAGTCTGCTGCCG GCCGCGACGTCTCCGTCATCGCCAAGACTGCCGTCGACGAGATCGTCGCCGCTCCAGCCTCCGCCATCTGCAAGAAGCTTGCCTTCGACTTGATCCGATC CACTCGCCTCACTACCGATCTCTGGGACAATGTCCGTGCCGGAGTACGCAACGATCTCCACTTTCCTGACCCTGACGTCACCGCCGCCGCAATCTCCATC CTCGCTGCCATGCCTTCCTACTGTCTCTCCAAGGTGATCACTGATTGTAGCGCTGAAATCTCCAGTTGCTTTGATTCTCCCAGTGACAACCTCAGGTTTT CCATTACCGAGACGTTGGGATCCGTTTTGGCGAGGGACGATTTGGTGACCTTGTGCGAGAACAACGTCAATCTGCTGGAGAAGGTTTCTGGTTGGTGGTC GAGGATTGGGCAGAACATGCTGGATAAATCCGATTCCGTTGCCAAAGTTGCGTTTGAATCCATTGGGAGGTTGTTTCAGGAGTTCAATTCCAAACGGATG AGCAGGTTAGCTGGTGATAAGTTAGTAGATAGTGAGAATTCAGTAGCTATTAGGTCGAAATGGGTGTCTTCGATGGTTGATTTCGTCTGGAAGAGGAGAA ATGCGTTGATGTCTCGCTCGTTGATCTTGCCTGTTGAGACCTTCAGGGCTACTGTTTTCCCTCTCGTGTACTCAGTGAAGGCAGTGGCATCTGGTAACGT GGAGGTGATTAGGAAGCTCTCTAAGGCCGCAGGTGGTGCCAATGGCACTGTGGTAGACTCCACTGCGGATAAGCTTGTTGGGGTTTCTGATGTGGTAACG CATTTGGCTCCTTTCTTAGGTTCCTCGTTGGATCCAGCACTGATCTTTGAAGTGGGGATTAATATGTCATACTTGGCGGATGTGCCAGGAGGCAAGCCAG AGTGGGCGTCTCAGTCTATAATTGCAATCCTAACACTTTGGGACAGGCAAGAGTTCTCTTCAGCGAGGGAGAGTATTGTTAGAGCTGTTGTTACGAATCT ACACCTTCTTGATCTTCATATGCAGGTTTCATTGTTCAAAAGGCTGCTTGTTATGGTTAGAAATTTGAGGGCAGAATCAGATCGTATGCATGCCTTAGCA TGTATTTGTCGAACAGCTCTGTGTGTTGACCTTTTTGCAAAGGAGAGCGTCCGAAGAGGCCAAAAACCTCTTGTTGGAACTGATATTGCTTCTCTTTTCG AAGATGCACGGATTAGAGATGATCTCAACAGCGTTACCAGTAAAAGTCTTTTTAGAGAAGAGCTGGTGGCTTCGCTGGTGGAAAGTTGCTTTCAGTTGTC TCTACCTTTACCTGAGCAAAAGAACTCAGGAATGGAAAGCCGAGTGATTGGTGCATTGGCTTATGGAACTGCATATGGTGCCCTGAATTGGACAGAGCCA GCTCTAGAGGTTGTGGAAGTTTGTAGACCTTGTGTAAAGTGGGATTGTGATGGCAGGACATATGCAATTGATTGCTATCTGAAGTTGCTTGTTAGGTTGT GCCATATCTATGATACCAGGGGAGGTGTAAAAACTATTAAGGATGGTGCTTCTCAGGATCAGATCCTGAATGAGACTAGGTTGCAGAATCTTCAACGTCA TCTCGTGAAGGATCTTCGGGAGGTGCATACACAACGAGTATCTCCGCGTGTCATATGGGCTATTGCTGAGCATCTGAACTTAGATGGTTTGGATCCTCTT CTAGCAGATGATCCTGAAGATCCTTTAAACATGATAATATCGAACATCCACAAAATTTTGTTCAACGTGGATTCATCTGCAAGTACAACAAATAGACTTC AAGATGTCCAGGCAGTTCTGTTAAGTGCTCAGCGGTTGGGATCTCGCAATGCTAGGGCTGGCCAGTTGCTGACCAAGGAGCTTGAGGAATTCAGAATCAG TAATTTAGCTGATTCTGTGAGCAAGCATCAGTGCCGACTGATATTACAGAGAATTAAATATGTTCAAGCTCGTACTGAAAACAGGTGGGCTGCAGTAAAC GAGGCTAGAGGGGACTACCCATTTACGCACCACAAACTTACTGTTCAGTTTTATGAAGCAGCTGCAGCTCAAGATAGAAAGTTGGAAGGTCTAGTCCACA AGGCCATTTTGGAGCTCTGGAGGCCGGATCCAAGCGAATTAACAGTATTGGTTACAAAAGGAGTTGATTCTTCACTGCTGAAAGTTCAACCTCCTGCATA TACATTGTCCGGCAGTAGTGATCCATGCTATGTTGAAGCTTATCATCTGGCTGACTCTGGAGATGGAAGGATTACTCTACATCTTAAGGTATTAAATTTG ACAGAACTTGAACTGAATCGGGTGGACATTCGAGTTGGCTTATCTGGCGCATTGTATTTCATGGATGGATCTCTCCAAGCCGTACGACAGTTGCGCCATC TTGTTTCGCAGGATCCAGTTCTCTGCAGTGTGACAGTGGGGGTGTCCCATTTCGAAAGCTGTGCCCTCTGGGTTCAGGTCTTATACTACCCGTTTTACGG TAGCGGTGCAGCTGGAGATTATAACGGTGACTACACTGAAGAGGATCCCCAGATTCTTAGGCAGAAGAGGAGCTTAAGACCAGAATTAGGGGAGCCTGTG ATCTTGCGATGCCAGCCATACAAAATCCCGCTAACTGAACTTCTATTGCCTTACAAGATTTCTCCAGTCGAGTTCTTTCGACTGTGGCCTAGTTTACCTG CCGTAGTAGAGTGTACCGGTACTTATCTCTACGAAGGTAGCGGGTTCAAGGCAACTGCGGCCCAACAATATGGCTCTTCTCCATTCCTCAGCGGGCTGAA ATCGTTGTCTTCCAAGCCATTTCACAGAGTTTGTTCCCACGTAATCCGGACAGTGGCAGGATTTCAGCTATGCTATGCTGCAAAGACTTGGTTTGGAGGC TTCCTAGGGATGATGGTGTTTGGGGCCAGTGAAGTTAGCAGGAACGTGGATCTCGGGGATGAGACGACTACCATGATATGCAAGTTTGTTGTACGAGCAT CCGACGTATCAATCACCAAGGAAATCGAATCGGACTTACAAGGTTGGTTAGACGACCTTACCGAGGGCGGGGTGGAGTACATGCCGGAAGATGAAGTGAA GGAAGCAGCAACAGAGAGGCTACGAATATCGATGGAGCGTATCGCGTTACTAAAAGCTGCACAGCCTCAGCCGAGAAGTCCCAAATCGGAGGTGGAGGAC GACGAGGACGAGGACGAGGACGAAGATGAGAGGAAGAACAAAAAGGAAGGAAACGAGAAGGAGAAGAAAGAAGAGAAGAAAGGGCCTCAAACGCTGTCGA AACTAACAGCGGAGGAGGTTGAGCATATGGCGCTTCAGTCAGCAGTACTGCAAGAGTGGCACACGTTAATGTCTCTTCAGTCAGCCGTACTGCAAGAGTG GCACACGTTATGTAAGGAGAGAAGCATCAAAAGCTAG
AA sequence Show only first row Show all	>Lus10014599 pacid=23170962 polypeptide=Lus10014599 locus=Lus10014599.g ID=Lus10014599.BGIv1.0 annot-version=v1.0 MDILFAQIQADLRSNDALRQSGALLQSLQQSAAGRDVSVIAKTAVDEIVAAPASAICKKLAFDLIRSTRLTTDLWDNVRAGVRNDLHFPDPDVTAAAISI LAAMPSYCLSKVITDCSAEISSCFDSPSDNLRFSITETLGSVLARDDLVTLCENNVNLLEKVSGWWSRIGQNMLDKSDSVAKVAFESIGRLFQEFNSKRM SRLAGDKLVDSENSVAIRSKWVSSMVDFVWKRRNALMSRSLILPVETFRATVFPLVYSVKAVASGNVEVIRKLSKAAGGANGTVVDSTADKLVGVSDVVT HLAPFLGSSLDPALIFEVGINMSYLADVPGGKPEWASQSIIAILTLWDRQEFSSARESIVRAVVTNLHLLDLHMQVSLFKRLLVMVRNLRAESDRMHALA CICRTALCVDLFAKESVRRGQKPLVGTDIASLFEDARIRDDLNSVTSKSLFREELVASLVESCFQLSLPLPEQKNSGMESRVIGALAYGTAYGALNWTEP ALEVVEVCRPCVKWDCDGRTYAIDCYLKLLVRLCHIYDTRGGVKTIKDGASQDQILNETRLQNLQRHLVKDLREVHTQRVSPRVIWAIAEHLNLDGLDPL LADDPEDPLNMIISNIHKILFNVDSSASTTNRLQDVQAVLLSAQRLGSRNARAGQLLTKELEEFRISNLADSVSKHQCRLILQRIKYVQARTENRWAAVN EARGDYPFTHHKLTVQFYEAAAAQDRKLEGLVHKAILELWRPDPSELTVLVTKGVDSSLLKVQPPAYTLSGSSDPCYVEAYHLADSGDGRITLHLKVLNL TELELNRVDIRVGLSGALYFMDGSLQAVRQLRHLVSQDPVLCSVTVGVSHFESCALWVQVLYYPFYGSGAAGDYNGDYTEEDPQILRQKRSLRPELGEPV ILRCQPYKIPLTELLLPYKISPVEFFRLWPSLPAVVECTGTYLYEGSGFKATAAQQYGSSPFLSGLKSLSSKPFHRVCSHVIRTVAGFQLCYAAKTWFGG FLGMMVFGASEVSRNVDLGDETTTMICKFVVRASDVSITKEIESDLQGWLDDLTEGGVEYMPEDEVKEAATERLRISMERIALLKAAQPQPRSPKSEVED DEDEDEDEDERKNKKEGNEKEKKEEKKGPQTLSKLTAEEVEHMALQSAVLQEWHTLMSLQSAVLQEWHTLCKERSIKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014599 [exp]	0	1
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10015463 [exp]	1.7	0.9237
AT4G13710			Pectin lyase-like superfamily ...		Lus10023679 [exp]	2.0	0.9190
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10032067 [exp]	2.6	0.9010
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10030357 [exp]	4.9	0.9114
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018282 [exp]	4.9	0.9040
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10035450 [exp]	4.9	0.8991
AT1G31780			unknown protein		Lus10035691 [exp]	6.6	0.8761
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10031398 [exp]	7.2	0.8907
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10010047 [exp]	7.2	0.8695
AT4G13710			Pectin lyase-like superfamily ...		Lus10011758 [exp]	7.5	0.8800

Compare expression of checked genes

Lus10014599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.