Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032068 [exp] 628 / 0 ND / Lus10010972 [exp] 141 / 2e-37 ND / Lus10031351 [exp] 140 / 4e-37 ND / Lus10032091 [exp] 46 / 8e-05 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318600 [exp] 336 / 2e-111 ND / Potri.017G058200 [exp] 332 / 4e-110 ND / Potri.004G088000 [exp] 147 / 1e-39 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014600 pacid=23170951 polypeptide=Lus10014600 locus=Lus10014600.g ID=Lus10014600.BGIv1.0 annot-version=v1.0 ATGCCATCCAAGAGAAAGAAATGGACGGAAGCAGAAGAGAAAACCCTTATCGCTAAGTACGGTGAGATGGTCTCCGAAGGGACTCTTGCCAAGATGAAGA CACGGGAGAAGAAGTTCAAGCCGATTGCCCTGTATGTCAACTCGATGCACCATGCACGCGATCCGATTGCTTATCCTTGGCAGTGGACTTGGAAAGACGT GTCCACTAAGGTCCAGAACATGAGGCATCAGTATTCGTTGGTTAAGCAGAAGGTGAAGAAACCCAATTTCTCCGCAGAAGCTGATGGGCCGGAAGGTGGT TGTGTTGGTGGTGGGGGAGATTGTGCCATTGGAGATGAGTTTGACTGGGTGGAAGGGCTTACTCACTGGTCCAACTTCCTGCTCTACAAGGAAGTATTTG GGGATTTGCCGATTTCATACGGTGGTAATGGGAATGACTTGATGGGAGTGTTTAATGAGGATCGGGAGAATGGAGGATTGTTGGTGGGTACGACGGGGTT GGACATTGTTGAGTTTGGTCATTTAGGTAATTCAACTAATGGAGATTTCGGTGTGATCGATGGAAGCGAGAATGGAGTGCTGGGTTTGGGGTTTGATTAT GAAGGAGAAGAACCAGATGAACATTTCAATGGCAATGGTCGCATGAGGGAGGATGTTGATGAAGGTTTCATGAACGAAGAAGTGGCAGCCCCCGTGCCTA TTAGTACGAGGAAAAAGAGGAGGAAGAAGAAGGAGTTGAAAGGATTGGAGAAAAGGTTGTTCAGTTTCCTTTCAACTCAAGTGGGGCAACTGCGAGAAAT CGAGTCTCGGTTTGAGCAGCGGGAGGTGGAGAGGGACCGGGAGAGGCAGAGGAGGGAGATTGTACAAACGGAGAGGGAACAAGAGCTGGAAAGGAAGTTG GAAGAGAGGGAGAAAGAGAGAGAAGAGAGAGATAACTTGAGAAGACAGAGAATTCGAGAGTGGGAAGCCATGGAGAAAGAGAGTGAAGAGAGGGAAAGAA GAAGAAGAGATGAGGAGTTACTTGAAGAGAGGGAATGGGAGGAAAGGATGAATCGACGAAGGTTGGAATGGCAAAAGAGGATTGATGGGATGTTAAACCA GCACCGAGAAGAGATCGGGCAGGTTCAAACCCGCATTCTTCACGAGCAGCAAAACCTCACAAGCCAGTTACTGGGGATCGTTTCACAGTGGGCTGGCCAT CCAGCTGGTCTTTCCGATCACACAAGTGCTAGCAACCATTACATTTCCCAGATGATGCAGAATCTGCACCATGTGAACGGCATGGTTCATGGAGACACCA GAGTGGATGGAGATGCTCAAGATGACCAATTCATTGTGGATGGATAA
AA sequence Show only first row Show all	>Lus10014600 pacid=23170951 polypeptide=Lus10014600 locus=Lus10014600.g ID=Lus10014600.BGIv1.0 annot-version=v1.0 MPSKRKKWTEAEEKTLIAKYGEMVSEGTLAKMKTREKKFKPIALYVNSMHHARDPIAYPWQWTWKDVSTKVQNMRHQYSLVKQKVKKPNFSAEADGPEGG CVGGGGDCAIGDEFDWVEGLTHWSNFLLYKEVFGDLPISYGGNGNDLMGVFNEDRENGGLLVGTTGLDIVEFGHLGNSTNGDFGVIDGSENGVLGLGFDY EGEEPDEHFNGNGRMREDVDEGFMNEEVAAPVPISTRKKRRKKKELKGLEKRLFSFLSTQVGQLREIESRFEQREVERDRERQRREIVQTEREQELERKL EEREKEREERDNLRRQRIREWEAMEKESEERERRRRDEELLEEREWEERMNRRRLEWQKRIDGMLNQHREEIGQVQTRILHEQQNLTSQLLGIVSQWAGH PAGLSDHTSASNHYISQMMQNLHHVNGMVHGDTRVDGDAQDDQFIVDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014600 [exp]	0	1
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	1.4	0.8682
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10005161 [exp]	3.2	0.8413
AT5G64550			loricrin-related (.1)		Lus10011515 [exp]	3.2	0.8288
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	5.5	0.8374
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001696 [exp]	5.5	0.8288
					Lus10032068 [exp]	6.3	0.8327
AT1G67350			unknown protein		Lus10015785 [exp]	6.7	0.8201
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	10.6	0.7928
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	11.0	0.8227
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10018202 [exp]	11.2	0.7842

Compare expression of checked genes

Lus10014600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.