Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04970 626 / 0 ATGSL01, ATGSL1 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) AT4G03550 595 / 0 ATGSL5, PMR4, GSL5, ATGSL05 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) AT2G36850 430 / 2e-133 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1) AT1G06490 418 / 4e-129 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT3G07160 404 / 3e-124 CALS9, ATGSL10 glucan synthase-like 10 (.1) AT3G59100 404 / 4e-124 ATGSL11 glucan synthase-like 11 (.1) AT1G05570 404 / 5e-124 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT3G14570 400 / 9e-123 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT2G13680 398 / 5e-122 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT2G31960 396 / 3e-121 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039828 [exp] 644 / 0 AT4G03550 2762 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10000266 [exp] 644 / 0 AT4G03550 2613 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10033689 [exp] 641 / 0 AT4G03550 2828 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10031648 [exp] 637 / 0 AT4G03550 2827 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10030030 [exp] 525 / 4e-169 AT4G03550 2251 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10040891 [exp] 446 / 2e-142 AT2G36850 1124 / 0.0 CHORUS, glucan synthase-like 8 (.1) Lus10014796 [exp] 444 / 1e-138 AT2G36850 2935 / 0.0 CHORUS, glucan synthase-like 8 (.1) Lus10007327 [exp] 405 / 5e-129 AT1G06490 1448 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10002096 [exp] 407 / 7e-129 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052400 [exp] 709 / 0 AT4G04970 2583 / 0.0 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) Potri.013G131300 [exp] 647 / 0 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Potri.015G089300 [exp] 441 / 3e-137 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.001G011900 [exp] 414 / 1e-127 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.005G203500 [exp] 405 / 1e-124 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.001G230000 [exp] 405 / 2e-124 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G058300 [exp] 405 / 2e-124 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.002G058700 [exp] 399 / 2e-122 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.011G095100 [exp] 388 / 2e-118 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.001G012200 [exp] 380 / 1e-115 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02364 [flax] [poplar] Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence Show only first row Show all	>Lus10014601 pacid=23170904 polypeptide=Lus10014601 locus=Lus10014601.g ID=Lus10014601.BGIv1.0 annot-version=v1.0 ATGGCCTCGAGCTTCCCAGGACCTCCACAGCCCACGCGTGGCCCCTATCCACCGCACGCGCCGATGAATCACCACCAACCAGAAGTCTACAACATAATCC CTATCCACGACCTACTAACAGACCACCCCTCCCTCCGCTACCCGGAGGTCAGAGCCGCCGCCTCCGCCCTCCGCGCCGTCGGCGACCTCCGCAAGCCGCC GTTCATCCCATGGGACCCGCACATGGACTTGATGGATTGGCTGGGTCTACTGTTCGGATTCCAGGGAGATAGCGTCCGGAACCAGCGGGAGCACCTGGTC CTGCACTTAGCCAATTCCCAAATGCGCCTCCAGCCGCCGCCGGTGCTTCCCGACGCCCTCGACCCCACCGTCCTCCGCCGCTTCCGCCGCAAGCTGCTCG CCAACTACACCTCCTGGTGCTCCTACATCGGGAGGAGGTCGCAGCTGGTTTTCGGCGGTAGAACTAGTGGACGTTGGACTGAATCAGATATCCATGTTCG AGGCCAAGGTTGCAAGTGGAAACGGCGAGCAGGTATTGAGCAGAGATGTTTACAGACTGGGACATCGGATGGATTTCTTCCGGATGCTTTCCTTCCTGTG GGATTCTACTTCAATACGATGGTGGTGGTATTGACTGTCTATTCCTTCCTCTGGGGTCGTCTTTATCTTGCTCTCAGCGGTATTGAAGGTTACGCCATGG AGACCAGCAAAAACAACAAAGCCTTTGGTGTCATTTTGAATCAGCAGTTCATCGTCCAGATGGGTATTTTCACGGCACTCCCTATGGTTGTCGAAAACTC TCTTGAGCATGGGTTTCTCCCTGCTGTTTGGGACTTCTTAACAATGCAGTTGCAGCTAGCATCAGTTTTCTACACGTTCTCATTGGGAACTAAAGCCCAC TTCTTTGGCCGGACTATTCTTCACGGAGGTGCCAAGTACCGAGCTACGGGGCGTGGGTTCGTGGTTCAGCACAAGAGCTTTGCAGAGAATTACAGACTCT ATTCTCGGAGTCATTTCGTGAAGGCGATTGAACTCGGGGTGATTCTTATTGTATATGCTGCTCACAGCCCCATGTCGATGGATGCTTTTGTTTACATAGC CATGACATTGTCAAGCTGGTTCCTCGTCATCTCCTGGATAATGGCTCCCTTTGTTTTCAATCCATCCGGGTTCGACTGGTTGAAAACCGTTTATGATTTC GAGGATTTCGTGAACTGGATATGGTTCAAAGGAGGGGTCTTTACGAAAGCTGAGCAGAGTTGGGAGACTTGGTGGTACGAGGAACAGGACCATCTAAGGA ACACCGGTCTGTGGGGAAAATTGCTGGAAATCATATTGGACCTACGCTTCTTCATGTTCCAGTATGGCGTGGTGTACCAGCTAAACATCACTGGAGGGAA CACGAGCATATCTGTCTACTTGTTGTCTTGGATCTTCATGGTTGCCGTGGTTGGGATTTACATCGTGATGGTGTACTTTCAGGAGAGATTTGCGGCAAAG GAGCACATAAAGTACAGGATGGCTCAGCTCGTAGTGATCTCTCTCACTATACTCGTGCTAACTCTCTTCTTGGAGTTCACAGCTTTCACAATTCTTGATC TGATCAGCAGCTCTCTGGCATTCATCCCGACAGGGTGGGGGTTTATAAGCATTGCCCTGGTGCTCAGACCGTTTCTGCAGTCCACAGTCGTCTGGGACAC TGTGGTTTCGTTGGCTCGAGTCTACGACATGCTGTTTGGAGTGATCGTTCTGGCACCGGTGGCACTGCTGTCGTGGCTGCCTGGTTTCCAGTCGATGCAG ACGAGGATTCTGTTTAATGAGGCGTTCAGTAGAGGCCTGCAGATATCTAGGATTCTTAGTGGGAAGAAAACAAACTGA
AA sequence Show only first row Show all	>Lus10014601 pacid=23170904 polypeptide=Lus10014601 locus=Lus10014601.g ID=Lus10014601.BGIv1.0 annot-version=v1.0 MASSFPGPPQPTRGPYPPHAPMNHHQPEVYNIIPIHDLLTDHPSLRYPEVRAAASALRAVGDLRKPPFIPWDPHMDLMDWLGLLFGFQGDSVRNQREHLV LHLANSQMRLQPPPVLPDALDPTVLRRFRRKLLANYTSWCSYIGRRSQLVFGGRTSGRWTESDIHVRGQGCKWKRRAGIEQRCLQTGTSDGFLPDAFLPV GFYFNTMVVVLTVYSFLWGRLYLALSGIEGYAMETSKNNKAFGVILNQQFIVQMGIFTALPMVVENSLEHGFLPAVWDFLTMQLQLASVFYTFSLGTKAH FFGRTILHGGAKYRATGRGFVVQHKSFAENYRLYSRSHFVKAIELGVILIVYAAHSPMSMDAFVYIAMTLSSWFLVISWIMAPFVFNPSGFDWLKTVYDF EDFVNWIWFKGGVFTKAEQSWETWWYEEQDHLRNTGLWGKLLEIILDLRFFMFQYGVVYQLNITGGNTSISVYLLSWIFMVAVVGIYIVMVYFQERFAAK EHIKYRMAQLVVISLTILVLTLFLEFTAFTILDLISSSLAFIPTGWGFISIALVLRPFLQSTVVWDTVVSLARVYDMLFGVIVLAPVALLSWLPGFQSMQ TRILFNEAFSRGLQISRILSGKKTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10014601 [exp]	0	1
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	5.5	0.7874
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	6.3	0.7933
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	11.9	0.7908
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	13.1	0.7854
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	13.9	0.7594
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	15.9	0.7636
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10038994 [exp]	21.6	0.7474
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	23.9	0.7190
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	24.0	0.7089
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	24.7	0.7524

Compare expression of checked genes

Lus10014601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.