Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27220 525 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G51540 509 / 2e-180 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032070 [exp] 736 / 0 AT3G27220 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10034826 [exp] 524 / 0 AT1G51540 644 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10033376 [exp] 520 / 0 AT1G51540 644 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 43 / 0.0004 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006200 [exp] 527 / 0 AT1G51540 662 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G252100 [exp] 521 / 0 AT1G51540 637 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G334800 [exp] 307 / 1e-102 AT3G27220 0 / 1 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 53 / 1e-07 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G074200 [exp] 45 / 0.0001 AT5G01660 488 / 2e-164 unknown protein Potri.004G037400 [exp] 42 / 0.0005 AT1G16250 93 / 7e-21 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 42 / 0.0007 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014602 pacid=23170923 polypeptide=Lus10014602 locus=Lus10014602.g ID=Lus10014602.BGIv1.0 annot-version=v1.0 ATGGCGCCTCCTCTAATTCAAAGTCGAAAACAGCACCACCACCACCATGGCGTAGTATCAGCTACCAAGCTGGGTTTTATCTTGGTCTCTGTTTGCCTCT TGGGAGCAGCTGCTTTTCTTGTTGATTTCTTCTCGCTATCATCATCATCCTCTTCTTCCATTTCCGCCATTGCTTTTAACAACAATTCCAAGGTCGCTGG AGTCGTTAGGATTGACACCAACAAGAATGAGAGAAGCCCATCACTATCACCAACATTTGCTGATCTATCAGCTCCCGAGTTGGATTGGGAACAGATGCCT TCAGCTCCAGTGCCTCGTTTGGATGGTTACTCGGTTCAGATCAATCATCTTCTCTACGTTTTTGTAGGCTATCAAAATCTCGACAATGTGAATTCTCATG TTGATGTGTTCAATCTGAGTGAGAACAAATGGTCGGATAGGTTCGATACTCCAAAGGAGATGGCGAATTCGCACTTGGGAGTGGCGACCGATGGCAGTAG ATTCGTGTACATTGTCTCAGGACAGAAAGGTCCTCAGTGTAGAACGGCTATAACTCTTTGTTACTCTCTTGACACATTGACTAAGCAATGGTTCAGCTTG CCGACATTGCCTCTTCCTAGGTATGCTCCTGCTACACAGCTGTGGAGAGGGAGGCTTCATGTGATGGGTGGAAGCAAGGAGAATCGTCATACTCCAGGAT TAGAACACTGGAGCATTGCTGTAAAAGATGGCAGAGCTTTGGAGAAGGAATGGCGGAGTGAGGTACCAATTCCTCGTGGCGGACCCCACAGGGCTTGTGT TGTGGCAAATGATAAGTTGTTTGTAATTGGTGGCCAAGAGGGTGATTTCATGCCCAAACCCAACTCCCCGATTTTCAAATGCTCTCGAAGAAGAGAGGTG GTTTATGGCGATGTATACATGCTGGATAGTTCGATGAAGTGGCAAACTTTGGCACCAATGCCGAAACCCAACTCTCATATAGAATGTGCTTGGGTAGTCG TGAACAACTCGATTATTGTCGTCGGAGGTACGACAGAGAAGCATCCTCAGACCAAGAGGATGATGTTGGTTGGCGAGATCTTTCAGTTTCATCTCGACTC ACTGAGTTGGTCAGTAATCGGAAAGCTCCCTTACCGGGTAAAGACGACGCTTGCTGGCTTCTGGGAAGGATGGCTATACTTTACGTCTGGGCAGAGAGAC AGAGGACCTGATAATCCCCAACCCCAGAAGGTCATAGCAGAAACTTGGAGAACTAAACTGAAGCTGCCGTGA
AA sequence Show only first row Show all	>Lus10014602 pacid=23170923 polypeptide=Lus10014602 locus=Lus10014602.g ID=Lus10014602.BGIv1.0 annot-version=v1.0 MAPPLIQSRKQHHHHHGVVSATKLGFILVSVCLLGAAAFLVDFFSLSSSSSSSISAIAFNNNSKVAGVVRIDTNKNERSPSLSPTFADLSAPELDWEQMP SAPVPRLDGYSVQINHLLYVFVGYQNLDNVNSHVDVFNLSENKWSDRFDTPKEMANSHLGVATDGSRFVYIVSGQKGPQCRTAITLCYSLDTLTKQWFSL PTLPLPRYAPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGRALEKEWRSEVPIPRGGPHRACVVANDKLFVIGGQEGDFMPKPNSPIFKCSRRREV VYGDVYMLDSSMKWQTLAPMPKPNSHIECAWVVVNNSIIVVGGTTEKHPQTKRMMLVGEIFQFHLDSLSWSVIGKLPYRVKTTLAGFWEGWLYFTSGQRD RGPDNPQPQKVIAETWRTKLKLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	0	1
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10029724 [exp]	2.4	0.8731
AT3G13228			RING/U-box superfamily protein...		Lus10025671 [exp]	3.0	0.8415
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007875 [exp]	3.2	0.8846
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007874 [exp]	4.0	0.8688
AT2G27410	B3		Domain of unknown function (DU...		Lus10035394 [exp]	5.5	0.8465
AT1G66120			AMP-dependent synthetase and l...		Lus10031366 [exp]	6.0	0.8828
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	10.2	0.8438
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	12.4	0.8556
					Lus10003030 [exp]	13.7	0.7929
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10000841 [exp]	19.2	0.7736

Compare expression of checked genes

Lus10014602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.