Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40770 434 / 2e-155 ATPHB3 prohibitin 3 (.1) AT3G27280 422 / 2e-150 ATPHB4 prohibitin 4 (.1.2) AT5G14300 300 / 8e-103 ATPHB5 prohibitin 5 (.1) AT1G03860 237 / 1e-77 ATPHB2 prohibitin 2 (.1.2.3) AT4G28510 237 / 1e-77 ATPHB1 prohibitin 1 (.1) AT2G20530 232 / 1e-75 ATPHB6 prohibitin 6 (.1.2) AT5G44140 229 / 1e-74 ATPHB7 prohibitin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032072 [exp] 501 / 0 AT5G40770 486 / 7e-176 prohibitin 3 (.1) Lus10034395 [exp] 240 / 1e-78 AT1G03860 429 / 3e-153 prohibitin 2 (.1.2.3) Lus10019161 [exp] 239 / 4e-78 AT4G28510 434 / 4e-155 prohibitin 1 (.1) Lus10042515 [exp] 236 / 4e-77 AT1G03860 433 / 9e-155 prohibitin 2 (.1.2.3) Lus10021978 [exp] 236 / 4e-77 AT1G03860 436 / 9e-156 prohibitin 2 (.1.2.3) Lus10035521 [exp] 197 / 8e-62 AT5G40770 221 / 1e-71 prohibitin 3 (.1) Lus10027776 [exp] 154 / 4e-46 AT5G40770 173 / 9e-54 prohibitin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335700 [exp] 435 / 1e-155 AT5G40770 429 / 3e-153 prohibitin 3 (.1) Potri.017G065800 [exp] 433 / 6e-155 AT5G40770 433 / 7e-155 prohibitin 3 (.1) Potri.007G134700 [exp] 239 / 2e-78 AT4G28510 463 / 2e-166 prohibitin 1 (.1) Potri.017G017400 [exp] 233 / 7e-76 AT4G28510 457 / 5e-164 prohibitin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10014604 pacid=23170966 polypeptide=Lus10014604 locus=Lus10014604.g ID=Lus10014604.BGIv1.0 annot-version=v1.0 ATGGCTAACCAGGTTGCCATCTTCAACTTCTTGAAGTCCATCGCCAAGTCGGCCTTCGGCATCGGAGCTGCCGTGTCGGTCGCTGGCGCCTCGCTCTACA CCGTCGATGGAGGTGAGAGGGCTGTGATTTTCGACCGGTTCCAAGGAGTTCTCCCCAACACTGTCGGCGAAGGAACTCATTTCAGGATTCCGTGGCTCCA GACGCCCAATGTTTTCGATATCCGAACCAAGCCGCACACCTTCTCCTCCGTCTCTGGTACTAAGGATCTGCAGATGGTGAATCTCACTCTCCGTGTCCTC TCTCGCCCGGAGGTAACACGTTTGCCTTACATCTACCAACATCTTGGGCTGGAGTATGATGAGAAGGTCCTCCCATCAATCGGCAATGAGGTGCTGAAGG CTGTCGTAGCTCAATTCAATGCTGATCAGCTACTGACAGAGCGTCCTCGTGTTTCTGCCCTTGTTAGGGAGTCTCTTATCAGCCGTGCTAGGGACTTCAA CATTGTGCTTGATGATGTGGCAATCACCCATTTGTCCTATGGTGTTGAGTTCTCTAGGGCCGTCGAGCAGAAGCAGGTGGCTCAGCAGGAGGCTGAGAGG TCCAAATTTGTTGTCATGAAAGCTGACCAAGAGAGGAGGGCTGCTGTTATCAGGGCTGAGGGTGAAAGTGAGGCTGCCAAGCTGATCTCTGACGCCACCA CAAAGGCTGGAATGGGGCTGATTGAGCTTAGGAGGATCGAGGCGTCTAGGGAAATTGCTGGAACTCTTGCCAAGTCACCCAATGTGGCATACCTTCCCGG TGGCAACAACATGCTCCTTGCATTGAACGCTGGCCGTTGA
AA sequence Show only first row Show all	>Lus10014604 pacid=23170966 polypeptide=Lus10014604 locus=Lus10014604.g ID=Lus10014604.BGIv1.0 annot-version=v1.0 MANQVAIFNFLKSIAKSAFGIGAAVSVAGASLYTVDGGERAVIFDRFQGVLPNTVGEGTHFRIPWLQTPNVFDIRTKPHTFSSVSGTKDLQMVNLTLRVL SRPEVTRLPYIYQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPRVSALVRESLISRARDFNIVLDDVAITHLSYGVEFSRAVEQKQVAQQEAER SKFVVMKADQERRAAVIRAEGESEAAKLISDATTKAGMGLIELRRIEASREIAGTLAKSPNVAYLPGGNNMLLALNAGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10014604 [exp]	0	1
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10032072 [exp]	1.0	0.9555
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10017852 [exp]	2.0	0.9421
AT1G73240			unknown protein		Lus10026209 [exp]	3.2	0.9009
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10010430 [exp]	5.3	0.9132
AT1G27090			glycine-rich protein (.1)		Lus10036699 [exp]	6.0	0.8990
AT5G02050			Mitochondrial glycoprotein fam...		Lus10024351 [exp]	6.3	0.9031
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	7.7	0.9158
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	16.0	0.9102
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	17.9	0.8828
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10021027 [exp]	18.8	0.8743

Compare expression of checked genes

Lus10014604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.