Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14280 234 / 3e-73 GeBP DNA-binding storekeeper protein-related (.1) AT3G25950 182 / 8e-57 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT3G27270 181 / 1e-56 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032075 [exp] 213 / 1e-69 AT5G14280 197 / 3e-60 DNA-binding storekeeper protein-related (.1) Lus10036981 [exp] 169 / 8e-52 AT5G14280 243 / 9e-81 DNA-binding storekeeper protein-related (.1) Lus10015821 [exp] 139 / 6e-38 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335100 [exp] 242 / 2e-80 AT5G14280 333 / 6e-112 DNA-binding storekeeper protein-related (.1) Potri.008G178800 [exp] 189 / 1e-59 AT3G25950 266 / 3e-90 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) Potri.010G056000 [exp] 0 / 1 AT5G14280 72 / 6e-16 DNA-binding storekeeper protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10014607 pacid=23170854 polypeptide=Lus10014607 locus=Lus10014607.g ID=Lus10014607.BGIv1.0 annot-version=v1.0 ATGCAGCAGCTGCTCCATACCCTAATCTCCCCCTTCACCACCGCCGCCTCCCCCGCTGTCCTTCCTCTCTTCTTCACCTTCTTCCTCCTCACATACCTCT TCGCTTACAACATCCTCTTCCGCCGCTGGACTCCTTCCACCCGCCCCGAAGCCTCCAGCTGCCTAATCTCCCTCTTCCATGGCACTCCCGCTGTCTTCCT CGCCTCCTTCTCCCTCTTCTCCCACCCTTCCTCCGCCTCCTCCCCCCTTACCTTCTCATCGCTCAACACTCCTCCCCAATCCGCCGTCCTCGATTTCAGC GTTGCCTACTTCCTCGTCGATCTCCTTCATTACCTCGTCTTCTGCCCGGGCGAAGTCCTCTTCATCGGACACCATTTGGCCACTCTCTTCGTCTTCCTCA CCTGCCGCTACCTCGTCGGCCACGGTGCCTTCTCGATTCTCTCACTGTTGATCCTTGCCGAAGTCACCAGCTTCTGCCAGAACGTTTGGACGCTTGCAGG TATGCGCAGGAGGGACTCCTCCATTGCTGCTAGGGTTTACGCTTTGCTGTCTCCCCCGTTTTATGCTTTTTACTCTGTGGTCCGTGGGGTTTTGGGTCCC TACTTCGTGTGGAGGATGGGGGAGTTCTATTGGAGTGGCGCTGCCGATCTTGTTGTGCCTAGGTGGGTTTGGGTTTCGTGGATGGTGGTTGTGGTTGGGG CCATCTCTGTTAGTATACTGTGGGTTGCCAATTTGTGGGTTGAGTTGCACAGAGAAAGGAAGGGTAGTTTGGAAAAGAAACACAGATAG
AA sequence Show only first row Show all	>Lus10014607 pacid=23170854 polypeptide=Lus10014607 locus=Lus10014607.g ID=Lus10014607.BGIv1.0 annot-version=v1.0 MQQLLHTLISPFTTAASPAVLPLFFTFFLLTYLFAYNILFRRWTPSTRPEASSCLISLFHGTPAVFLASFSLFSHPSSASSPLTFSSLNTPPQSAVLDFS VAYFLVDLLHYLVFCPGEVLFIGHHLATLFVFLTCRYLVGHGAFSILSLLILAEVTSFCQNVWTLAGMRRRDSSIAARVYALLSPPFYAFYSVVRGVLGP YFVWRMGEFYWSGAADLVVPRWVWVSWMVVVVGAISVSILWVANLWVELHRERKGSLEKKHR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10014607 [exp]	0	1
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10032075 [exp]	2.8	0.8626
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10042268 [exp]	4.2	0.8200
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043185 [exp]	4.6	0.8098
AT1G12440			A20/AN1-like zinc finger famil...		Lus10006671 [exp]	5.0	0.8006
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10014530 [exp]	5.7	0.8082
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	7.0	0.7929
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10037607 [exp]	8.0	0.7863
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041513 [exp]	10.4	0.7844
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	13.3	0.7801
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10036801 [exp]	14.1	0.7520

Compare expression of checked genes

Lus10014607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.