Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55590 176 / 6e-54 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G39770 167 / 1e-50 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT4G30570 157 / 4e-47 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21540 55 / 1e-08 ATSFH3 SEC14-like 3 (.1.2.3) AT4G39180 50 / 3e-07 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 50 / 3e-07 ATSFH12 SEC14-like 12 (.1) AT1G75370 44 / 3e-05 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 43 / 6e-05 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G19650 40 / 0.0005 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 40 / 0.0007 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024356 [exp] 178 / 1e-54 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10004699 [exp] 174 / 3e-53 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 174 / 3e-53 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10001014 [exp] 166 / 2e-50 AT2G39770 476 / 1e-169 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10039916 [exp] 117 / 2e-32 AT2G39770 116 / 1e-30 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 107 / 9e-28 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10028332 [exp] 104 / 6e-26 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 99 / 9e-24 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 85 / 5e-19 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060100 [exp] 176 / 6e-54 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.006G090300 [exp] 176 / 7e-54 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 175 / 2e-53 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.010G198800 [exp] 172 / 2e-52 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.007G020300 [exp] 64 / 6e-12 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.005G119700 [exp] 64 / 1e-11 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.009G119400 [exp] 50 / 5e-07 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 48 / 2e-06 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.002G032600 [exp] 42 / 0.0003 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 41 / 0.0004 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10014608 pacid=23170856 polypeptide=Lus10014608 locus=Lus10014608.g ID=Lus10014608.BGIv1.0 annot-version=v1.0 ATGGTGGCAACAAGTTTAGAAAGTTCAGAAGTGGCATGGATTAGCAAGTTGCCACAGTTCTTGGGAGGGACTTGCACATGTGAGGAACATGGCGGCTGCA AGCGGTCTGATAAAGGTCCATGGAAGGATGAAGAAATCATCGAGATGATTCAAAATGGAGAGTACAAATGTAAAAAGACAAGTAGTGACCTTGATGATAA ACCAGACGAGAAGACCATCTCTGAGGATGAGATCGTCTACTCAAAGGTGGATGAGCCATCGAAATACGGAGTGGTGGTTATGGAAGAAGCAACAGGGAAG GTAGAGACGTTCGTCGAGAGGCCAAAGATTTTTGTGGGGAACAAGGTGAACGCAGGCATCTACCTGCTAAATCCATCCATGGTGGACAGGATTTCATTGG GACCAACCTCGATTGAGAAGGAAGTTTTCCCACAGATCACTAGTGACAATAAACTTTACGCCATGGTCCTTCCTGGGTTTTGGATGGACATAAGACAACC GAAAGATTACATCTCGGGTTCAGACTGCCTCGATTCATTGAGAAAGATGTCACCGTTTGGTTCTAACCATGAAATCAACTGGTCAGATTCCAAAAAAGCC TCCCATGCATACTCATCTAGGAGGACGTAA
AA sequence Show only first row Show all	>Lus10014608 pacid=23170856 polypeptide=Lus10014608 locus=Lus10014608.g ID=Lus10014608.BGIv1.0 annot-version=v1.0 MVATSLESSEVAWISKLPQFLGGTCTCEEHGGCKRSDKGPWKDEEIIEMIQNGEYKCKKTSSDLDDKPDEKTISEDEIVYSKVDEPSKYGVVVMEEATGK VETFVERPKIFVGNKVNAGIYLLNPSMVDRISLGPTSIEKEVFPQITSDNKLYAMVLPGFWMDIRQPKDYISGSDCLDSLRKMSPFGSNHEINWSDSKKA SHAYSSRRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	0	1
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	1.7	0.8285
AT3G06440			Galactosyltransferase family p...		Lus10043102 [exp]	6.5	0.8200
AT3G56160			Sodium Bile acid symporter fam...		Lus10043384 [exp]	6.7	0.8218
AT5G04270			DHHC-type zinc finger family p...		Lus10037973 [exp]	9.1	0.7075
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	9.8	0.8342
					Lus10006129 [exp]	10.0	0.8316
AT1G18750	MADS	AGL65, AGL102	AGAMOUS-like 65 (.1.2)		Lus10034464 [exp]	11.3	0.7505
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10027422 [exp]	12.0	0.7962
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10009201 [exp]	12.2	0.7128
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	13.9	0.7195

Compare expression of checked genes

Lus10014608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.