Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14270 320 / 4e-99 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G27260 298 / 2e-89 GTE8 global transcription factor group E8 (.1.2) AT5G63320 273 / 1e-78 NPX1 nuclear protein X1 (.1.2.3) AT3G01770 234 / 2e-67 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT1G73150 148 / 4e-38 GTE3 global transcription factor group E3 (.1) AT1G17790 141 / 1e-35 DNA-binding bromodomain-containing protein (.1) AT1G06230 141 / 9e-35 GTE4 global transcription factor group E4 (.1.2.3) AT5G65630 125 / 9e-30 GTE7 global transcription factor group E7 (.1) AT5G10550 123 / 5e-29 GTE2 global transcription factor group E2 (.1) AT5G46550 120 / 1e-28 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032076 [exp] 959 / 0 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10033623 [exp] 136 / 5e-33 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 136 / 6e-33 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 136 / 7e-33 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10011989 [exp] 129 / 3e-31 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10002784 [exp] 127 / 2e-30 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1) Lus10007096 [exp] 127 / 2e-30 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 121 / 6e-30 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10034067 [exp] 125 / 1e-29 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335000 [exp] 444 / 8e-146 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.012G094300 [exp] 397 / 3e-127 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.015G091800 [exp] 392 / 2e-125 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.011G096400 [exp] 145 / 4e-37 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 144 / 1e-35 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.011G077100 [exp] 142 / 1e-35 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1) Potri.019G090700 [exp] 142 / 4e-35 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.001G355300 [exp] 139 / 2e-34 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.001G285700 [exp] 137 / 1e-33 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.001G376400 [exp] 133 / 2e-33 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10014609 pacid=23170958 polypeptide=Lus10014609 locus=Lus10014609.g ID=Lus10014609.BGIv1.0 annot-version=v1.0 ATGGTGAAGAGTGATACTTACCGTGGAGCTTACTACCGAAGCTCACTAAGTGCAGCTGGTGAATTTGAGGGATCAGCAAGTTCTGGACAAATTGATATGG AGAATTATAATGCTCCAGCAAGGAAATTCGTGAACTTGAATTCTAGTAAACGGGAAACATTTGGGGTACCTACACAGGTGTTTGCTTCTGCAAAAATGTC TTCATCTGAAAGAAAGGATCTTGCTCTAAAGTTGAGATCCGAGCTTGAACAGATCCGTATCTTTCAGAAGAAATTTGTTGACAGGGGAGGCGGTGTTGCT CATTCTTCTAATCACATTCTGAATGGTGCACATCATAAGAAATCCTCAGTTCTTCCTTCTGCTCACGGGAATAAAGGAAGTGCTGTGCGAAAACTGAAGC CACACCCTGTGAGGGAACCAACAACATCAAATTCGGGAAATGCACTCTTGATGAAACAATGTGGATCTTTGTTGGGTCGTTTGATGTCTCATCAATATGC TTATATCTTCAATTCACCAGTTGATGTCGAGATGCTGAACATCCCTGATTACTTCACCATTATTAAGCGTCCGATGGATTTAGGAACTATAAAGAGCAAT ATAGTGAAAGGTTTGTACTCAAGCCCATTGGAGTTTGCGGAAGATGTCAGGCTGACCTTCAGTAATGCTATGCTGTACAATCCTAAGACCAATGATGTCC ATAAAATGGCTCAGACCCTTAGCAAGGATTTTGAAACGAGATGGAAACTTATAGAGAAGAAATTGCCGAAGACTGTGCCCAAATATCAGCCAGAAAAGCC ATGTCAGCCAGAAAAACCATATCAGCCAGAAAAGCCATATCAGTCAGAAAAGCCATGTCAGTCAGATAAGCCAGTTCGTCACGACCATTTCAATGCTGTT GAAGCACCATCTTCTAAAAAAAGAAAAATAAGCTCATCCAAGCATGAAGATTCCGTAGAACCTGTAAAGCGGGTGATGACTAGTGACGAGAAGTACAAGT TGAGTGCGGAGCTTGAGGCTTTGTTGCCTGAAATGCCTGTGCACATAATTGATTTCTTGAAAGAGAATAGTTCTGGTGGACAAGATGCTGGCCAAGATGA AATTGAGATAGACATTGATGATCTCAGCGATGATACATTATTCACTCTGAGGAAACTCTTGGATGATCACGCCAAAAAGAAGCCGGAGAATCTACCTAGA GGGGAGCCTTGTGAAATAGAGCTGTTGAATGAATCAGCACCAACCAACTCACCAATGCAGCGGCATATAGATGATGACCCAGTTGATGAAGATGTTGATA TTGGTGGCGACGAGCCACCTGGCCTAAGCTATCCACCTGTGGAGATAGAAAGTGACTTAGGCCCCGAGAGCCATAAATTTACGAGTTCAGATTCTGGTGG TTCTGAAATTGAATATGATCATGTGAAACCTTCGAGTCAATTACCTGCATCCAAGGTTCCTGAGGAATTTGGAGATGGGGGTGAACAGGATGATAAGACT ATTGGTGATCACTTCATGGACAAAAACCAATCTATTAGTGGGTTGGATCAGCTGGAAGAAAATTCCCGTAGTAGACCCGGGTCAGACGAGTCAGATAGTC GACAAGATGGAGAAAGTGTGCCAGGTGAGAGGCAGGCTTCTCCTCTTAGAAATGACAGGGCTACTATGATGAGAAAACGTTTCTCTGGTATGATATGGAA GGCTAAAGAAGAGAAGATACTCTTGCAGGGTGACAAAGTGGATCCAGACCAGCTGCGGCTAGAAAGAGAGAAATTAGAGTTGCAGAAAAAGAAAGAGATA GCAAGGTTAGAAGCAGAAGTTAAGGCCGCGGAAGATGCTCGTAAGAGGGCCGAGGCAGCTGCAGCTGAGGAGGCCAGGCGGCAGCGGGAGGTTGAAAGAG AAGCTGCGAGGCAGGCACTGCTCAAGATTGAGAGGACAGTTGAAATTAATGAGAACAAATGCCTGGAAGACTTGGAGATGCTTAGAAATGCACCCCCTGC TGAGCAGTTACCAAGCTCTGGGGAGGAATCAAGCCCAGATCACCTCCAGGATGATGGGTTGGGTGGTTTCAAATTTGATGGGGATAGCAATCCCCTGGAA CGACTTGGTTTGTTTATGAAAGACGACGAAGAGGAGGAAGAAGGCTGCGAGCCGATAAACAGCATTGTTGAAAACGAAACAGACGACGTAGAGGAGGGTG AAATCGATTAG
AA sequence Show only first row Show all	>Lus10014609 pacid=23170958 polypeptide=Lus10014609 locus=Lus10014609.g ID=Lus10014609.BGIv1.0 annot-version=v1.0 MVKSDTYRGAYYRSSLSAAGEFEGSASSGQIDMENYNAPARKFVNLNSSKRETFGVPTQVFASAKMSSSERKDLALKLRSELEQIRIFQKKFVDRGGGVA HSSNHILNGAHHKKSSVLPSAHGNKGSAVRKLKPHPVREPTTSNSGNALLMKQCGSLLGRLMSHQYAYIFNSPVDVEMLNIPDYFTIIKRPMDLGTIKSN IVKGLYSSPLEFAEDVRLTFSNAMLYNPKTNDVHKMAQTLSKDFETRWKLIEKKLPKTVPKYQPEKPCQPEKPYQPEKPYQSEKPCQSDKPVRHDHFNAV EAPSSKKRKISSSKHEDSVEPVKRVMTSDEKYKLSAELEALLPEMPVHIIDFLKENSSGGQDAGQDEIEIDIDDLSDDTLFTLRKLLDDHAKKKPENLPR GEPCEIELLNESAPTNSPMQRHIDDDPVDEDVDIGGDEPPGLSYPPVEIESDLGPESHKFTSSDSGGSEIEYDHVKPSSQLPASKVPEEFGDGGEQDDKT IGDHFMDKNQSISGLDQLEENSRSRPGSDESDSRQDGESVPGERQASPLRNDRATMMRKRFSGMIWKAKEEKILLQGDKVDPDQLRLEREKLELQKKKEI ARLEAEVKAAEDARKRAEAAAAEEARRQREVEREAARQALLKIERTVEINENKCLEDLEMLRNAPPAEQLPSSGEESSPDHLQDDGLGGFKFDGDSNPLE RLGLFMKDDEEEEEGCEPINSIVENETDDVEEGEID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27260		GTE8	global transcription factor gr...		Lus10014609 [exp]	0	1
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10028630 [exp]	1.4	0.8911
AT1G79020			Enhancer of polycomb-like tran...		Lus10034778 [exp]	1.4	0.8888
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	4.2	0.8723
AT3G63500			Protein of unknown function (D...		Lus10016399 [exp]	5.3	0.8626
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	6.3	0.8590
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	9.5	0.8320
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Lus10024130 [exp]	10.7	0.8535
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	11.3	0.7772
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Lus10038957 [exp]	12.3	0.8528
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	12.5	0.8408

Compare expression of checked genes

Lus10014609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.