Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27250 99 / 3e-24 unknown protein AT3G48510 86 / 1e-19 unknown protein AT5G50360 78 / 1e-16 unknown protein AT5G63350 78 / 1e-16 unknown protein AT5G40790 74 / 2e-15 unknown protein AT5G40800 68 / 3e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032077 [exp] 351 / 5e-123 AT3G27250 127 / 3e-35 unknown protein Lus10007752 [exp] 41 / 0.0007 AT1G27461 300 / 6e-100 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091900 [exp] 93 / 6e-22 AT5G50360 221 / 8e-71 unknown protein Potri.012G094400 [exp] 86 / 2e-19 AT5G50360 233 / 3e-75 unknown protein Potri.001G334500 [exp] 83 / 3e-18 AT3G27250 153 / 6e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014610 pacid=23170919 polypeptide=Lus10014610 locus=Lus10014610.g ID=Lus10014610.BGIv1.0 annot-version=v1.0 ATGGACGGCGGAGGAGGAGGGGGAAAGTTTCGACTCACAAACTTCTCAAGAGAAGGCGGAGGATCAGTGCAAGTTGACGAGTCAACGATGATCAACCGGA TGATGCTCAGATTCCGCCCCATCGCTCCCAAACCGGCCGCCGGCGTCGACCCCGCCGGATCCAGACCTCTTCCCAAGGTAAGGACGAAGCGTAAGTACGT TAGGGTTACGGCGGCCAGAAGGAAGAAGAACAAAAAAGATAATAATAATAATAATAACAATAATAAAAAGTTAGGTGAGGATCAGGAAGCATCAGATCGG ATGACGCTCCAGCTGCTGCCGTCGCCGGAGGGAGGTGGTAGATCTGAGCAGGAGGAGGAGGAGGCGGTGGAGACGTGGGTGACGGCGGAGGAAGGGGTGG TGGAGGAGTGCATGGAGAGGAATATTAAAGGGTGGTTGTTAGGGAAGGAGGATCTGGAAGAGGACACGTGTCCAGTGTTTGTATCGGACGGCGAAGGGAA CGTGGTGTGGGTAAATGACGCGTACAGGGAGATGGCCGGTAGAGTGAATAAGGTTCCGAACAAGGTAACAGTGAGATTGGTGGTTGCTGAGAAGGTAAGG CCATACTTGGAGAGCTACCAAGTGCCATTTAGTTGCTGGGTAGGGCTCAAGTTTAGAGTTCATAATAGTAATGGTAAGAAAGATGAGTGGAAATGGTGGT ACATGAGGGTTCCATGTGATGTGTGGAAAATGGAACATGATCAGGGGTTTGCTTGGAGATTGGATGTTCAGGTTGCTCTCAAACTTGGCCTCTAG
AA sequence Show only first row Show all	>Lus10014610 pacid=23170919 polypeptide=Lus10014610 locus=Lus10014610.g ID=Lus10014610.BGIv1.0 annot-version=v1.0 MDGGGGGGKFRLTNFSREGGGSVQVDESTMINRMMLRFRPIAPKPAAGVDPAGSRPLPKVRTKRKYVRVTAARRKKNKKDNNNNNNNNKKLGEDQEASDR MTLQLLPSPEGGGRSEQEEEEAVETWVTAEEGVVEECMERNIKGWLLGKEDLEEDTCPVFVSDGEGNVVWVNDAYREMAGRVNKVPNKVTVRLVVAEKVR PYLESYQVPFSCWVGLKFRVHNSNGKKDEWKWWYMRVPCDVWKMEHDQGFAWRLDVQVALKLGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27250			unknown protein		Lus10014610 [exp]	0	1
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	1.7	0.8554
AT2G21990			Protein of unknown function, D...		Lus10035847 [exp]	2.2	0.8004
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019882 [exp]	3.5	0.8067
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	3.5	0.7981
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10039005 [exp]	4.5	0.8017
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	7.6	0.8130
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10017201 [exp]	7.7	0.7443
					Lus10012752 [exp]	11.5	0.7631
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10030080 [exp]	13.0	0.7774
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10026103 [exp]	13.4	0.7226

Compare expression of checked genes

Lus10014610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.