Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25440 130 / 8e-35 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G51980 129 / 2e-34 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G49200 99 / 2e-23 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G40880 96 / 3e-22 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT1G47610 41 / 0.0005 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014598 [exp] 522 / 0 AT4G25440 134 / 2e-36 zinc finger WD40 repeat protein 1 (.1) Lus10032062 [exp] 443 / 2e-157 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10014595 [exp] 285 / 8e-91 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10032066 [exp] 262 / 5e-85 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10004085 [exp] 192 / 2e-61 AT4G25440 145 / 1e-42 zinc finger WD40 repeat protein 1 (.1) Lus10021656 [exp] 200 / 2e-60 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10021655 [exp] 186 / 3e-56 AT4G25440 169 / 3e-48 zinc finger WD40 repeat protein 1 (.1) Lus10001652 [exp] 179 / 1e-55 AT5G51980 192 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021640 [exp] 165 / 4e-50 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077800 [exp] 143 / 9e-39 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G137200 [exp] 137 / 4e-37 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.012G134800 [exp] 134 / 5e-36 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.009G109500 [exp] 46 / 2e-05 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 43 / 0.0002 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 42 / 0.0006 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10014612 pacid=23170906 polypeptide=Lus10014612 locus=Lus10014612.g ID=Lus10014612.BGIv1.0 annot-version=v1.0 ATGGTTGTAAACACCGACTCCTCCGGGCGAATTAGGGTTTCTGGACAAAATCAGAGGAATAACGGGATCGTCTGTCGGTATTGGAAACAGGCGAGGTGTG ATCGGAACCCCTGTAGGTTCCTCCACGAAGACTCCCCGTCATCTTCGGCGACCTACTACTCATCACAGCCTCGATCCAATGTTTACGTTCGCAGATCTCA GAGTAAACCCCCGTCTGCGCCTATCGGTGACCACCAGAGAAATTCCCAGGCTACTCCTCAGAAACCGAAAGTTGTCGATGAGATCGCTGAAGACGATGGG AAGAGCAAAGAGACGGCTTGTCGAGAGTGGATCTCCGGGGATTGCTTTAGAGGAGAAGAATGCAAGTTTTCACACGCTTGGTTCCGTGGAGATGGATTGT CGATGATGGGACGGCTTGATGGGCATGGTAATTCTGTTGTTTCGGTCAATAAATTATTTCCACCAAAGCCTTCCAGAAGAGCCACCACTCGCAACCACAC TTTCCAGTGCCTAGAGACTTTCAAGGGGCATGACCAAGCAGTGATGTCTCTACTCTGCTTCTCGGAGTACCTTCTATCCTGCTCCCTGGATTGCAAGATC AAAGTATGGGGCCGCAGCAATGGAGAAGGGAGGTTTGAATGGATGTATACCCATGAAGAAGCAGACGGTGCTCTGGCCTTGTGTGGAGTCGATCTGAATG GGAAGCCGATGTTGCTATGCTCCTGGAACAACGATTCAGTCGGTGTGTACGAGCTGCCATCGTTTGCAGAGAAGGGAAGAATGTACAGAAAAGGTGAAGT GAGGAGCATTGGAGGAGGTCGTGATGGGATGGTATTCACTGGAGATGCTGCTGGTCTTGTTACTGTTTGGAGACTAACACACCAAGTGGAAATGGAGCAG TAG
AA sequence Show only first row Show all	>Lus10014612 pacid=23170906 polypeptide=Lus10014612 locus=Lus10014612.g ID=Lus10014612.BGIv1.0 annot-version=v1.0 MVVNTDSSGRIRVSGQNQRNNGIVCRYWKQARCDRNPCRFLHEDSPSSSATYYSSQPRSNVYVRRSQSKPPSAPIGDHQRNSQATPQKPKVVDEIAEDDG KSKETACREWISGDCFRGEECKFSHAWFRGDGLSMMGRLDGHGNSVVSVNKLFPPKPSRRATTRNHTFQCLETFKGHDQAVMSLLCFSEYLLSCSLDCKI KVWGRSNGEGRFEWMYTHEEADGALALCGVDLNGKPMLLCSWNNDSVGVYELPSFAEKGRMYRKGEVRSIGGGRDGMVFTGDAAGLVTVWRLTHQVEMEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40880			WD-40 repeat family protein / ...		Lus10014612 [exp]	0	1
AT1G23780			F-box family protein (.1)		Lus10033762 [exp]	2.8	0.8424
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10026230 [exp]	4.5	0.8325
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10018692 [exp]	7.4	0.8173
AT4G02720			unknown protein		Lus10022052 [exp]	10.4	0.8217
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	12.6	0.8195
AT4G02720			unknown protein		Lus10042601 [exp]	13.3	0.8150
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10038577 [exp]	17.3	0.8156
AT5G62440			Protein of unknown function (D...		Lus10023594 [exp]	19.6	0.7949
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013106 [exp]	19.8	0.7808
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	20.4	0.8114

Compare expression of checked genes

Lus10014612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.