Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16780 86 / 2e-20 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) AT3G14700 65 / 1e-13 SART-1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032078 [exp] 113 / 3e-33 AT5G16780 47 / 8e-07 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10000639 [exp] 97 / 3e-24 AT5G16780 818 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10023155 [exp] 96 / 8e-24 AT5G16780 811 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10000285 [exp] 52 / 1e-08 AT5G16780 187 / 1e-53 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082100 [exp] 90 / 6e-22 AT5G16780 767 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03343 [flax] [poplar] SART-1 SART-1 family
Representative CDS sequence Show only first row Show all	>Lus10014613 pacid=23170971 polypeptide=Lus10014613 locus=Lus10014613.g ID=Lus10014613.BGIv1.0 annot-version=v1.0 ATGGAAGATTACAAGGCTGGTGGGTCCATTGCAGCAAACGACGAGACAATTAAAGATGAAGACACTACTGTTATCATGCAGCAAGATGCGAAAGACGAGA TTTTTCATGCAGTTGGTGTTGGCAGAGGATTATCAGGCGCATTGAAGCTGCTTCATAAGCGAGGAGCACTCAAAGAAAGCATCAACTTGGATTCCACGGA TCGGTTTAAGGATATTCATATAGAGAGGACGGACGAATTCTGCAGAACTATGACTCCAAAACAGTCCGTTAGGGCCTTGTGTCATGGATTCCATGGCCAG AGGCCTGGGAAAAAGAAGCAGCAGAAGCGCATCAAGCTATATCAGCAAGAACTGAAGGCCAGAAAAGACAGAACTATAAGTTAA
AA sequence Show only first row Show all	>Lus10014613 pacid=23170971 polypeptide=Lus10014613 locus=Lus10014613.g ID=Lus10014613.BGIv1.0 annot-version=v1.0 MEDYKAGGSIAANDETIKDEDTTVIMQQDAKDEIFHAVGVGRGLSGALKLLHKRGALKESINLDSTDRFKDIHIERTDEFCRTMTPKQSVRALCHGFHGQ RPGKKKQQKRIKLYQQELKARKDRTIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10014613 [exp]	0	1
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10024710 [exp]	2.4	0.8556
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	5.9	0.8571
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	9.2	0.8218
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10019231 [exp]	9.6	0.8493
					Lus10003753 [exp]	9.9	0.8218
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10032339 [exp]	10.6	0.8218
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10024711 [exp]	11.0	0.7718
AT3G27470			Protein of unknown function (D...		Lus10035228 [exp]	11.0	0.8269
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	11.2	0.8218
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	14.0	0.8399

Compare expression of checked genes

Lus10014613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.