Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40760 782 / 0 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1) AT3G27300 780 / 0 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3) AT5G13110 444 / 1e-151 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1) AT1G24280 442 / 8e-151 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1) AT5G35790 432 / 4e-147 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1) AT1G09420 325 / 6e-105 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014615 [exp] 807 / 0 AT5G40760 905 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10032079 [exp] 779 / 0 AT5G40760 873 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10006386 [exp] 447 / 4e-153 AT5G35790 904 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10003134 [exp] 432 / 8e-147 AT5G13110 973 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10011340 [exp] 431 / 2e-146 AT5G13110 967 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10012340 [exp] 370 / 4e-124 AT5G35790 705 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10012339 [exp] 78 / 2e-17 AT5G35790 181 / 5e-56 glucose-6-phosphate dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070200 [exp] 810 / 0 AT5G40760 902 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.001G337400 [exp] 793 / 0 AT5G40760 910 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.014G166800 [exp] 441 / 1e-150 AT5G35790 931 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Potri.001G059900 [exp] 425 / 5e-144 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.003G168000 [exp] 422 / 5e-143 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.013G005200 [exp] 332 / 9e-108 AT1G09420 815 / 0.0 glucose-6-phosphate dehydrogenase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00479 [flax] [poplar] G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02781 [flax] [poplar] G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014614 pacid=23170976 polypeptide=Lus10014614 locus=Lus10014614.g ID=Lus10014614.BGIv1.0 annot-version=v1.0 ATGGCATCGGGAATGGAGAAGATGGAATCGGATCATCCTGCGAGTTGTCTCTCAATCGTCGTCCTCGGCGCTTCCGGTGATCTTGCCAAGAAGAAGACTT TCCCCGCACTTTTCAACCTTTATCGCCAGGGTTCAGTTAATTCTGAAGATGTATCTGAGTTCTTGGCACTGATTAAGTATGTGAGCGGGTCTTACGATAC TGAGGAAGGGTTTCAGCTGCTGGATAAGGAAATTTCAGAGCATGAAGAGTCCAAAAACAGTGCAGATGGGTCTAGCAGAAGATTGTTCTATCTTGCACTT CCTCCATCAGTTTATCCAGTTGTCTGCAACATGATCAAACAATACTGTATGAACAAATCTGATTGTGGTGGCTGGACCCGAATTGTCGTTGAGAAACCAT TCGGCAAGGACTTGGAGACTGCAGAGGAACTCAGTGCACAGATAGGAGAGCTGTTTGAGGAACGTCAGATTTACCGCATTGATCACTATTTGGGGAAAGA ACTTGTTCAGAATTTGTTGGTGCTTCGCTTTGCGAATCGCTTGTTCTTACCCTTATGGAACCGCGATAACATTGACAATGTCCAGATTGTTTTTCGCGAG GATTTCGGAACTGAAGGCCGGGGTGGATATTTTGATGAATACGGAATTATCAGAGACATCATTCAAAATCACCTGTTGCAAGTTCTTTGCCTCGTAGCCA TGGAAAAGCCAGTCTCTTTGAGCTCTGAGCATATTCGGGATGAAAAATTAAAGGTTCTTCAGTCTGTGGAGCAGATCAAAGATGAAGAGGTTGTTCTTGG ACAATACGATGGCTACAGAGATGATCCAACGGTCCCTGACGACTCCAACACCCCTACATTTGCTTCTATCGTCCTGCGAATCCACAACGAAAGATGGGAA GGTGTGCCTTTCATTCTAAAGGCAGGGAAAGCAATGGGTTCAAAGAAGGCAGATATTCGTATACAGTTCAAGGATGTTCCTGGTGATATATTCAAATGCC AAAAGCAAGGAAGGAATGAGTTTGTAATGAGGCTGCAACCTTCAGAAGCCATGTATATGAAACTTGCAGTTAAACAGCCTGGACTGGAGATGTCAACGGT TCAAAGCGAACTGGACTTGTCCTATAAACAACGTTACCAAGGTGTTACAATTCCTGATGCTTACGAACTCCTCATTCTCGACACAATCAGAGGGGATCAG CAACATTTTGTTCGAAGAGATGAGTTGAAGGCTGCTTGGGAGATCTTCACACCAGTACTGCACAGGATCGACAATGGCGAGCTGAAGACGATTTCATACG AACATGGCAGCAGAGGGCCTGCAGAAGCTGACGAGCTGCTGGTGAAAGCTGGCTATGTCCGGACTCACGGTTACAGATGGATTCCTCCTGCTATGTAA
AA sequence Show only first row Show all	>Lus10014614 pacid=23170976 polypeptide=Lus10014614 locus=Lus10014614.g ID=Lus10014614.BGIv1.0 annot-version=v1.0 MASGMEKMESDHPASCLSIVVLGASGDLAKKKTFPALFNLYRQGSVNSEDVSEFLALIKYVSGSYDTEEGFQLLDKEISEHEESKNSADGSSRRLFYLAL PPSVYPVVCNMIKQYCMNKSDCGGWTRIVVEKPFGKDLETAEELSAQIGELFEERQIYRIDHYLGKELVQNLLVLRFANRLFLPLWNRDNIDNVQIVFRE DFGTEGRGGYFDEYGIIRDIIQNHLLQVLCLVAMEKPVSLSSEHIRDEKLKVLQSVEQIKDEEVVLGQYDGYRDDPTVPDDSNTPTFASIVLRIHNERWE GVPFILKAGKAMGSKKADIRIQFKDVPGDIFKCQKQGRNEFVMRLQPSEAMYMKLAVKQPGLEMSTVQSELDLSYKQRYQGVTIPDAYELLILDTIRGDQ QHFVRRDELKAAWEIFTPVLHRIDNGELKTISYEHGSRGPAEADELLVKAGYVRTHGYRWIPPAM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014614 [exp]	0	1
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028328 [exp]	3.6	0.8849
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	9.9	0.8768
AT1G13990			unknown protein		Lus10036787 [exp]	10.0	0.8451
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10014292 [exp]	10.5	0.8590
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	12.0	0.8393
AT3G26085			CAAX amino terminal protease f...		Lus10006251 [exp]	14.8	0.8386
AT5G06830			unknown protein		Lus10012023 [exp]	17.3	0.8574
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	19.8	0.8192
AT5G03905			Iron-sulphur cluster biosynthe...		Lus10014201 [exp]	21.4	0.8244
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	25.1	0.8382

Compare expression of checked genes

Lus10014614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.