Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40760 905 / 0 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1) AT3G27300 867 / 0 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3) AT5G13110 479 / 1e-164 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1) AT1G24280 475 / 5e-163 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1) AT5G35790 467 / 4e-160 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1) AT1G09420 350 / 4e-114 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032079 [exp] 1018 / 0 AT5G40760 873 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10014614 [exp] 807 / 0 AT5G40760 782 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10006386 [exp] 473 / 3e-162 AT5G35790 904 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10003134 [exp] 460 / 4e-157 AT5G13110 973 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10011340 [exp] 460 / 9e-157 AT5G13110 967 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10012340 [exp] 393 / 2e-132 AT5G35790 705 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10012339 [exp] 78 / 2e-17 AT5G35790 181 / 5e-56 glucose-6-phosphate dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070200 [exp] 932 / 0 AT5G40760 902 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.001G337400 [exp] 901 / 0 AT5G40760 910 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.014G166800 [exp] 476 / 3e-163 AT5G35790 931 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Potri.001G059900 [exp] 459 / 7e-157 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.003G168000 [exp] 457 / 4e-156 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.013G005200 [exp] 357 / 5e-117 AT1G09420 815 / 0.0 glucose-6-phosphate dehydrogenase 4 (.1.2) Potri.005G005866 [exp] 53 / 1e-07 AT1G09420 133 / 4e-36 glucose-6-phosphate dehydrogenase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00479 [flax] [poplar] G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02781 [flax] [poplar] G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014615 pacid=23170851 polypeptide=Lus10014615 locus=Lus10014615.g ID=Lus10014615.BGIv1.0 annot-version=v1.0 ATGGGAGGAAGCGGAGATCAATGGATAATGGAGAAGAGAGATAGTTTCAGGAGCGAGCCTGTTGAGTTGGATGTCCCTGAAACTGGGTGCCTCTCAATCA TTGTGCTTGGTGCTTCTGGTGATCTTGCCAAGAAGAAGACTTTCCCTGCTCTTTTCAATCTTTACCGTCAGGGATTTCTCCAATCAAATGAAGTTCACAT CTTTGGATATGCAAGGACTAAGATCTCTGATGATGGTCTTAGAAATCGCATTCGTGGTTATCTTGAAAAGGATTCAGTGAAGTCTGAGGATGTATCCAAG TTCTTACAACTGATCAAATATGTTAGTGGCTCCTATGACACTGAGGAAGGATTTCAGCTGCTGGATAAGGAAATTTCGCTGCATGAAGAATCCAAAAATA GCACAGAAGGATCATCTAGAAGACTGTTTTATCTTGCACTTCCTCCGTCAGTGTATCCTGTGGTTTGCAGGATGATCAAACTTTGTTGTATGAACAAATC TCATCTTGGTGGCTGGACCCGCATTGTTGTTGAAAAGCCATTTGGCAAGGATTTGGAATCTGCAGAGAAACTGAGTAACCAAATCGGGGACTTGTTTGAG GAACCTCAACTCTACCGTATTGATCACTATCTTGGAAAAGAATTGGTGCAGAACTTGTTGGTGCTTCGCTTTGCAAATCGCTTCTTTTTACCTCTCTGGA ATCGAGATAACATTCAGAATGTCCAGATTGTTTTCCGGGAGGATTTCGGAACTGAAGGTCGTGGTGGATATTTTGATGAATACGGAATCATCCGTGATAT CATTCAAAATCACCTGTTACAAGTTCTTTGTCTCGTTGCAATGGAAAAGCCCGTCTCTTTGAAGCCTGAACACATTCGTGATGAGAAAGTCAAGGTTCTT CAATCGGTGCTGCCAATTAATGATGAAGAGGTTGTCCTAGGGCAATACAATGGATATAGAGATGATCCAACTGTTCCTGATCAGTCTAACACCCCGACAT TCGCTACTGTTGTTTTACGAATTCATAATGAGAGATGGGAAGGTGTTCCTTTTATCCTAAAGGCAGGGAAAGCATTGAATTCCAGAAAGGCTGAGATCCG CATTCAATTCAAGGATGTTCCCGGTGATATATTCAAATGTAAAAAGCAGGGAAGAAATGAATTTGTGATACGCCTGCAGCCGTCGGAAGCCATGTACATG AAACTCACAGTTAAGCAGCCTGGATTGGATATGTCAACAGCTCAAAGTGAGCTAGACTTGTCTTATAGACAACGTTACCAAAATGTCACCATTCCAGAGG CGTATGAACGCCTGATTCTCGATACAATCAGAGGCGATCAGCAGCATTTTGTTCGTAGAGATGAGTTGAGGGCTGCATGGGAAATCTTCACACCACTTCT GCATAGGATTGATGATGGGGAGATGAAGCCGATGCCATACCAACCAGGCAGCAGGGGTCCTGCAGAGGCGGATGAGCTGTTAGAGAAAGCCGGTTACGTC CAAACACATGGCTACATTTGGATCCCCCCAACTCTATGA
AA sequence Show only first row Show all	>Lus10014615 pacid=23170851 polypeptide=Lus10014615 locus=Lus10014615.g ID=Lus10014615.BGIv1.0 annot-version=v1.0 MGGSGDQWIMEKRDSFRSEPVELDVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDGLRNRIRGYLEKDSVKSEDVSK FLQLIKYVSGSYDTEEGFQLLDKEISLHEESKNSTEGSSRRLFYLALPPSVYPVVCRMIKLCCMNKSHLGGWTRIVVEKPFGKDLESAEKLSNQIGDLFE EPQLYRIDHYLGKELVQNLLVLRFANRFFLPLWNRDNIQNVQIVFREDFGTEGRGGYFDEYGIIRDIIQNHLLQVLCLVAMEKPVSLKPEHIRDEKVKVL QSVLPINDEEVVLGQYNGYRDDPTVPDQSNTPTFATVVLRIHNERWEGVPFILKAGKALNSRKAEIRIQFKDVPGDIFKCKKQGRNEFVIRLQPSEAMYM KLTVKQPGLDMSTAQSELDLSYRQRYQNVTIPEAYERLILDTIRGDQQHFVRRDELRAAWEIFTPLLHRIDDGEMKPMPYQPGSRGPAEADELLEKAGYV QTHGYIWIPPTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	0	1
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	1.4	0.9263
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10040814 [exp]	3.2	0.9324
AT5G55560			Protein kinase superfamily pro...		Lus10001165 [exp]	5.5	0.9188
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10035194 [exp]	6.9	0.9059
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	7.0	0.9184
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10006229 [exp]	7.1	0.8954
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10006864 [exp]	7.5	0.9140
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	8.3	0.9260
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	10.4	0.9216
AT1G77220			Protein of unknown function (D...		Lus10018920 [exp]	16.8	0.8837

Compare expression of checked genes

Lus10014615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.