Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27310 214 / 3e-69 PUX1 plant UBX domain-containing protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032080 [exp] 344 / 1e-120 AT3G27310 302 / 3e-104 plant UBX domain-containing protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264500 [exp] 258 / 7e-87 AT3G27310 237 / 1e-78 plant UBX domain-containing protein 1 (.1) Potri.009G059300 [exp] 247 / 1e-82 AT3G27310 209 / 9e-68 plant UBX domain-containing protein 1 (.1) Potri.001G337533 [exp] 130 / 2e-37 AT3G27310 120 / 1e-33 plant UBX domain-containing protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10014616 pacid=23170866 polypeptide=Lus10014616 locus=Lus10014616.g ID=Lus10014616.BGIv1.0 annot-version=v1.0 ATGGTCGTTGATAGCTCTTATTCTCCTCTACATCTGAAGCGACGTAGACTCACCACTCTCGATTCCATGGAAGCTCAAGAAGCCAAGGCCAAGTTTGCTG CTGTGAAAGAAAAGTTTGGTCGAGATCTTCGTGTATTCGAAACCGCACCTGTCTCTGCATCCCCAAGTCAGGTGTCTAATGATGATGAGACAGATGACTA CTATGAGTTCACAGCGGAGGACTATTATCGTATTCTTGGAAAAAAGAAAGACGATAAAACTTTGAAGACTAGAAAACTTCGTGAAGCAGAAGAAGCAGCT CGCAGGTCAAGAATAACAAAGGCTGTTATCAGAGTTCGGTTTCCTGATAACATCACACTGGAGGTGCCATTTCAATCGTCAGAACAGCTACAGAGCCTAT TCGACCTCCTTACTAAAGTGGTTACTCACCCAGAAATACCATTCTATCTTTTCATAACTCCTCCAAAGAAGCAAATCAAAGACCTCTCGCTTGATTTCTA CTCAGCAGGCTTCATTCCTGGTGCAATTGTGTATTTTGCATATGATCTACCTAAAGTATCAGAAGATGATGTAACTGTTACGTCTGGTCCGTACCTAAAA GAAGAGATTATGTCTTTGAAAGGGCTGGAGATCGTACCGGAACTAGTGGAGCCTGTTCATACCGCCCCAGAACCAGCAACAACAGAGCCTGTTGCTGCAG GACCTCCTCCCCAAGAGCGTAAGCCTGCCGAGAGAAAGCTTGTGAAACCAAAGTGGATGAAATGA
AA sequence Show only first row Show all	>Lus10014616 pacid=23170866 polypeptide=Lus10014616 locus=Lus10014616.g ID=Lus10014616.BGIv1.0 annot-version=v1.0 MVVDSSYSPLHLKRRRLTTLDSMEAQEAKAKFAAVKEKFGRDLRVFETAPVSASPSQVSNDDETDDYYEFTAEDYYRILGKKKDDKTLKTRKLREAEEAA RRSRITKAVIRVRFPDNITLEVPFQSSEQLQSLFDLLTKVVTHPEIPFYLFITPPKKQIKDLSLDFYSAGFIPGAIVYFAYDLPKVSEDDVTVTSGPYLK EEIMSLKGLEIVPELVEPVHTAPEPATTEPVAAGPPPQERKPAERKLVKPKWMK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27310		PUX1	plant UBX domain-containing pr...		Lus10014616 [exp]	0	1
AT2G34585			unknown protein		Lus10023307 [exp]	10.4	0.7291
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Lus10011138 [exp]	11.9	0.7574
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10034308 [exp]	21.7	0.6356
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10005419 [exp]	22.3	0.7219
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10027797 [exp]	31.3	0.7253
AT2G19270			unknown protein		Lus10020014 [exp]	37.3	0.6767
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10020589 [exp]	40.2	0.7027
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	41.5	0.7132
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	43.1	0.7141
AT1G11360			Adenine nucleotide alpha hydro...		Lus10018515 [exp]	44.4	0.7047

Compare expression of checked genes

Lus10014616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.