Plant FIBer expression Database

Lus10014617 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40740 886 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032081
[exp]
920 / 0 AT5G40740 728 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G337700
[exp]
946 / 0 AT5G40740 954 / 0.0 unknown protein
Potri.001G337600
[exp]
931 / 0 AT5G40740 949 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10014617 pacid=23170886 polypeptide=Lus10014617 locus=Lus10014617.g ID=Lus10014617.BGIv1.0 annot-version=v1.0
ATGATTATGGACAGAGAGAAGGAGAGAGAGATAGAGCTGGAGAGCGCAATGTACACCAACTGTTTGTTGTTGGGTCTGGATCCGAACGTAATCGGCCTCG
GGACCTCCTCCAACGGCAGTCCTCGAGTTGGCCTCTTCCGCCATTCCAACCCTAAATTGGGCGAGCAGCTCCTCTACTTCATACTCTCCTCCCTTCGTGG
TCCTGTTCAATCCGCCAAAGATTTCGACAAGGTGTGGCCGATTTTTGATTCGGCACAGTCGCGCGATTTTCGTAAGGTCGTCCAAAGTATCATCAGCGAG
CTTGAATCCCAAGGGGCACTGCCGAGGAGTAATTCGAGGGTTTCTTCGCTTGCTACGTGTTGCGGTCCCAGATTTGTTGAACTTCTATGGCAACTTTCTT
TACATGCCTTAAGGGAAGTTCACAGGCGGACATTTTCAGCTGATGTAGCTTCAAACCCGCTACCTGCTTCGCTAACAGATGTTGCTTTTCAGCATGCAGC
CACTCTTCTTCCTGTAACAAAGGCTAGAGTGGCACTTGAAAGAAGAAGGTTTCTCAAGAATGCAGAGATGGCTGTACAAAGGCAGGCTATGTGGTCAAAT
TTGGCTCATGAAATGACAGCAGAGTTCCGTGGTCTCTGTGCTGAAGAGGCTTATTTGCAGCAAGAGCTGGAAAAGTTGCATGACTTGAGAAACAAAGTGA
AATCAGAGGGAGACGTATGGGATGATCTCGTGTCTAGCTCTAGTCAGAATTCACATCTGGTTTCGAAGGCCAGCCGTCTTTGGGAATCTATATTAGCTCG
CAAAAGTCAACATGAAGTTCTGGCTTCAGGCCCAATTGAGGACCTAATAGCTCATCGAGAGCACAGGTACCGAATTTCTGGTTCAGCTTTGCTCTCTGCG
ATGGATCATAGTTCTCAGGTTCCCAACAATCATTCACATTTGGTGGATAAAGAACAAAGTGATGGATCTTATGATGAGACAGATTCTAGAGCTGATGATA
GAGGTGGAAGAGTCCATCAAACTGTTGATGTTGCAGAAATCATCCGACGTTGGACACATGCATTGCAGCGTATCCATAAGCAGTCACTTCACATGGCAAA
AGCTAATGATGGGGAAGGTCCTGATATATTGAGAAGTGGTAAGGATGGGAGTGCAAGTGGCCATGCCGAGTCTTTAGCTGCAACTTTAGCCGAACATCAG
CAACACCTTTCTAGTTTCCAGGTGCTAATTAATCAACTTAAAGAAGTTGCTCCCGCAATACAGAACTCAATAGTAGATTGTACAGAGGTTGTGAATAGTA
TATCCTCCACCTTGCCGCCTGTCACCAATCACCGTGTACGAGCAACCTCACCTATACAAGCTCAGAGTACTAGAAGGGAATTGGAAGGTAGCTCAGAAGA
AGCTGCTGAGCTAACTTCCAGGATGTCTTCTCTTCAGCTTGGCAAGGCGTCTGCTAGTCCTATGACACTGAAGTTGCCTCATTTATTCAATTTGACACCA
AACGCTGGAAAAGTGGGAAATGTTCAAAAGAAACAGACACTAGCTATCGAAGTGAACCAGATGGAAAGTCTTTCTGTAGGGAGCTCTCTGGATCAGCCAG
TGTCAAACAGTCATCTGGATAACCAACTTCAAGATAATGATCAAGACTATATTCAAAACTTGAAGAGATCCGTTAGGGAAGCAGCTTTGTTTACACAATC
GTGTAGTTCGGAATCATCCCGAGGCAGTCATTCTGATAGTTCAGAACACTTCTTCGTACCTTTCTCGGCAAGCGGGTATTCTGTTCCGGGGCCAGAAAGA
AAAGTTTCTTCAACAAGGAGCAAAAGATCGACTGCTTCTCAAATGGGAGGACCATCATGGAACAGTCATGCCTCATATGGCGATGCTAGGAGCAAGACCA
GTGATTTACCTGATGTTTTGCGTGATTTCGACTCACTTTCGGATTATGACCATCTAAATAGCTTTCTATTGACAGCTGGATCTAATGGCTCGTTATCTGA
TGGCCAAAGGTCGTTTTATGATGTGGATGACTCTATTGGTCAGGTCTTCTCACCACCTCTGTTAACGGATGACACATTGTTATCAGATTCTTATGAAGAT
TTACTTGCTCAACAGAGTATTGCTGCTGGTGCTCGTGGTCGAGGAATCCGAAAAAGAGCCAAGCTCGGTAAAGAGTCCTCGAAGCTTAGCTGTGAGTCTC
AATCTCTCGTGGGTCACATGAAAAGCTTCGGCCATGCATCGGAAACGCAGCAGCTCCAGGTGACTCCTTGA
AA sequence
>Lus10014617 pacid=23170886 polypeptide=Lus10014617 locus=Lus10014617.g ID=Lus10014617.BGIv1.0 annot-version=v1.0
MIMDREKEREIELESAMYTNCLLLGLDPNVIGLGTSSNGSPRVGLFRHSNPKLGEQLLYFILSSLRGPVQSAKDFDKVWPIFDSAQSRDFRKVVQSIISE
LESQGALPRSNSRVSSLATCCGPRFVELLWQLSLHALREVHRRTFSADVASNPLPASLTDVAFQHAATLLPVTKARVALERRRFLKNAEMAVQRQAMWSN
LAHEMTAEFRGLCAEEAYLQQELEKLHDLRNKVKSEGDVWDDLVSSSSQNSHLVSKASRLWESILARKSQHEVLASGPIEDLIAHREHRYRISGSALLSA
MDHSSQVPNNHSHLVDKEQSDGSYDETDSRADDRGGRVHQTVDVAEIIRRWTHALQRIHKQSLHMAKANDGEGPDILRSGKDGSASGHAESLAATLAEHQ
QHLSSFQVLINQLKEVAPAIQNSIVDCTEVVNSISSTLPPVTNHRVRATSPIQAQSTRRELEGSSEEAAELTSRMSSLQLGKASASPMTLKLPHLFNLTP
NAGKVGNVQKKQTLAIEVNQMESLSVGSSLDQPVSNSHLDNQLQDNDQDYIQNLKRSVREAALFTQSCSSESSRGSHSDSSEHFFVPFSASGYSVPGPER
KVSSTRSKRSTASQMGGPSWNSHASYGDARSKTSDLPDVLRDFDSLSDYDHLNSFLLTAGSNGSLSDGQRSFYDVDDSIGQVFSPPLLTDDTLLSDSYED
LLAQQSIAAGARGRGIRKRAKLGKESSKLSCESQSLVGHMKSFGHASETQQLQVTP

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G40740 unknown protein Lus10014617
[exp]
0 1
AT1G73660 protein tyrosine kinase family... Lus10009062
[exp]
1.0 0.8314
AT2G19600 ATKEA4 K+ efflux antiporter 4, K+ eff... Lus10040549
[exp]
1.4 0.8212
AT1G35780 unknown protein Lus10033456
[exp]
6.2 0.7860
AT3G44200 IBO1, ATNEK6 "NIMA \(never in mitosis, gene... Lus10013338
[exp]
7.3 0.7804
AT3G16857 GARP ARR1 response regulator 1 (.1.2) Lus10016846
[exp]
8.5 0.7432
AT2G01480 O-fucosyltransferase family pr... Lus10013460
[exp]
9.1 0.7127
AT3G54860 ATVPS33 VACUOLAR PROTEIN SORTING 33, S... Lus10038698
[exp]
10.1 0.7574
AT1G07670 ATECA4 endomembrane-type CA-ATPase 4 ... Lus10028139
[exp]
11.4 0.7659
AT1G19835 Plant protein of unknown funct... Lus10033160
[exp]
11.8 0.7835
AT1G78300 14-3-3OMEGA, GF... 14-3-3 PROTEIN G-BOX FACTOR14 ... Lus10020940
[exp]
13.3 0.7481

Lus10014617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.