Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26020 578 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT4G15415 577 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT1G13460 572 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 564 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 508 / 4e-180 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G09880 501 / 3e-177 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 481 / 5e-169 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G25510 460 / 7e-161 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 436 / 2e-151 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032082 [exp] 718 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 585 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 583 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 570 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10036926 [exp] 556 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10006440 [exp] 555 / 0 AT3G26020 651 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10037057 [exp] 555 / 0 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10011381 [exp] 552 / 0 AT3G26020 643 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10031536 [exp] 539 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070100 [exp] 634 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054300 [exp] 621 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 611 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.014G157000 [exp] 594 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.008G179900 [exp] 581 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 578 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.002G226200 [exp] 578 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.016G098400 [exp] 493 / 8e-174 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 490 / 7e-173 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 456 / 3e-159 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10014619 pacid=23170948 polypeptide=Lus10014619 locus=Lus10014619.g ID=Lus10014619.BGIv1.0 annot-version=v1.0 ATGGTCTCCGTAAATTTATTTAGACCGCTCACCTCTCCGCCCCGTGAGCACAAAGCGTTGGAAGCTTTTGATGTGGAAGAGGAAGAGCCATCAATGGACC CTGCGTGGCCCCATCTACAAGTTGTGTATGAATTGTTATTGAGGTTTGTGGCATCACCTGAGACGGATGCAAAATTGGCTAAGAGGTACGTAGACCACTC ATTTGTTCTCAGGTTACTGGATCTCTTTGATTCAGAGGATCCAAGAGAGAGGGAGTATTTGAAAACAGTCCTGCATCGCATCTATGGAAAGTTCATGGTG CACAGGCCATTCATTAGAAAGGCGATCAACAATATCTTCTACCGTTTTATATTTGAAACTGAGAAGCACAATGGAATTGCAGAACTGTTGGAGATTCTGG GAAGTATAATCAATGGTTTTGCTCTTCCTCTGAAAGAAGAGCACAAGCTTTTTCTTGTACGAGCTCTAATTCCATTACATAAACCAAAGTGCTTACCAAT GTACCACCAACAGTTGTCGTACTGCATAACCCAGTTTGTGGAGAAAGACTGCAAGCTTGCTGATACCGTCATAAGGGGTTTGCTCAAGTATTGGCCAGTA ACAAACAGCACCAAAGAGGTTTTGTTTTTGGGTGAACTAGAAGAAGTACTTGAAGCTACTCAACCTGCAGAGTTTCAACGCTGCATGGTGCCTTTATTCC GCCAGATTAGTCGATGCTTGAGCAGTTCACACTTTCAGGTGGCAGAAAGGGCATTGTTCTTATGGAACAACGATCACATCGAGCACCTAATCAAACAAAA CCGCAAAATCATTCTACCAATAATCTTCCCTTCCCTTGAGAGGAACGTTCGGCGCCACTGGAACCAGGCAGTACAAAGCCTGACCCTGAATGTCCGGAAG ATTTTCTCTGATGCTGATCCAGAGCTTTTCGACGAATGCTTGGTCAAGTTCCAGGACGACGAAGCACGAGAGAACGAAGTCAAACTGAAACAGGAAGCCA CATGGAAACGTCTTGAAGATATTGCTGCGATGAAAGTTTCAAGCAGCAACGAAGCCGTCCTGGTCTCTCCTAGAACTACAAAACTAATGCGTTCTAGCTA A
AA sequence Show only first row Show all	>Lus10014619 pacid=23170948 polypeptide=Lus10014619 locus=Lus10014619.g ID=Lus10014619.BGIv1.0 annot-version=v1.0 MVSVNLFRPLTSPPREHKALEAFDVEEEEPSMDPAWPHLQVVYELLLRFVASPETDAKLAKRYVDHSFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMV HRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCLPMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPV TNSTKEVLFLGELEEVLEATQPAEFQRCMVPLFRQISRCLSSSHFQVAERALFLWNNDHIEHLIKQNRKIILPIIFPSLERNVRRHWNQAVQSLTLNVRK IFSDADPELFDECLVKFQDDEARENEVKLKQEATWKRLEDIAAMKVSSSNEAVLVSPRTTKLMRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10014619 [exp]	0	1
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	3.7	0.8239
AT3G58050			unknown protein		Lus10029299 [exp]	5.0	0.8268
AT1G75140			unknown protein		Lus10010815 [exp]	8.2	0.8066
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	8.8	0.8205
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	13.0	0.7685
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	13.2	0.7973
AT3G14580			Pentatricopeptide repeat (PPR)...		Lus10026191 [exp]	18.8	0.7289
AT5G62960			unknown protein		Lus10014556 [exp]	20.4	0.7535
AT2G27770			Plant protein of unknown funct...		Lus10009405 [exp]	20.7	0.7176
AT1G79990			structural molecules (.1.2.3.4...		Lus10035895 [exp]	21.2	0.7825

Compare expression of checked genes

Lus10014619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.