Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63170 108 / 9e-29 Chalcone-flavanone isomerase family protein (.1) AT2G26310 76 / 1e-16 Chalcone-flavanone isomerase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032083 [exp] 293 / 4e-101 AT3G63170 140 / 3e-40 Chalcone-flavanone isomerase family protein (.1) Lus10022046 [exp] 103 / 6e-27 AT3G63170 296 / 1e-100 Chalcone-flavanone isomerase family protein (.1) Lus10022045 [exp] 102 / 3e-26 AT3G63170 283 / 7e-96 Chalcone-flavanone isomerase family protein (.1) Lus10042592 [exp] 102 / 3e-26 AT3G63170 298 / 2e-101 Chalcone-flavanone isomerase family protein (.1) Lus10042591 [exp] 99 / 5e-25 AT3G63170 274 / 5e-92 Chalcone-flavanone isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052200 [exp] 108 / 1e-28 AT3G63170 290 / 2e-98 Chalcone-flavanone isomerase family protein (.1) Potri.006G219600 [exp] 69 / 1e-13 AT2G26310 407 / 1e-140 Chalcone-flavanone isomerase family protein (.1.2.3) Potri.018G048500 [exp] 63 / 8e-12 AT2G26310 389 / 3e-133 Chalcone-flavanone isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0560 [flax] [poplar] Chalcone-like PF02431 [flax] [poplar] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Lus10014620 pacid=23170968 polypeptide=Lus10014620 locus=Lus10014620.g ID=Lus10014620.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCAGAGAAAGAAGTAGCAGAAGAAGAAATTGCAGTTGAAGTTGAACCAAAAACTGGGATTTCCTTTCCAGTCAAGTTGGCTGATGGGAAGC AATTGATGAGTGTTGGATTGTATTCTGACAGTGAGAAACTAAAGGAGAATCTCAAGGAGAAAATTACAAAGCCATCCACAAAGCCAACCAAGGAAATGTA CGAGGCCGTCATCGACGATGATTCAGCCATGACAGTGAGGCTGGTGATTGTGTTCTCTGGACTCACCATGAACATGGTCAAGAAGAGCTTCGTCGAAGGC CTTGGACCATCTATCAAGAAACTAACCGGAAGGAAGAAGAACGACGAGCTTGCAAACGAGGTGATGAGTGCAGCTTCTGATGGAATCAAGCTGACTAGTG GCTCTATAATCGAAATCTCCAGGCTTCCTGGTTATGTACTTCAAACCAAAGTGATGGATGAGGTCATCAGCAAGGTTAAGAGCGAGCTTCTATGCAGGGC TTATGTTAACATGTATTTGGGAGATGATCCATTTGACAAGGATACCAAGGAAAAATTTGGAATTTCCTTGCTTTCTCTGTTCTAA
AA sequence Show only first row Show all	>Lus10014620 pacid=23170968 polypeptide=Lus10014620 locus=Lus10014620.g ID=Lus10014620.BGIv1.0 annot-version=v1.0 MEEAEKEVAEEEIAVEVEPKTGISFPVKLADGKQLMSVGLYSDSEKLKENLKEKITKPSTKPTKEMYEAVIDDDSAMTVRLVIVFSGLTMNMVKKSFVEG LGPSIKKLTGRKKNDELANEVMSAASDGIKLTSGSIIEISRLPGYVLQTKVMDEVISKVKSELLCRAYVNMYLGDDPFDKDTKEKFGISLLSLF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63170			Chalcone-flavanone isomerase f...		Lus10014620 [exp]	0	1

Compare expression of checked genes

Lus10014620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.