Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14500 462 / 1e-165 aldose 1-epimerase family protein (.1) AT3G01590 453 / 5e-162 Galactose mutarotase-like superfamily protein (.1.2) AT5G57330 383 / 2e-134 Galactose mutarotase-like superfamily protein (.1) AT3G61610 341 / 1e-117 Galactose mutarotase-like superfamily protein (.1) AT4G23730 322 / 3e-110 Galactose mutarotase-like superfamily protein (.1) AT4G25900 308 / 8e-105 Galactose mutarotase-like superfamily protein (.1) AT5G66530 137 / 3e-38 Galactose mutarotase-like superfamily protein (.1.2) AT1G55370 43 / 0.0002 NDF5 NDH-dependent cyclic electron flow 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032084 [exp] 586 / 0 AT5G14500 494 / 2e-176 aldose 1-epimerase family protein (.1) Lus10020015 [exp] 395 / 1e-138 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 385 / 7e-135 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 365 / 5e-127 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 364 / 1e-126 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 357 / 2e-123 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 356 / 2e-123 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 352 / 4e-122 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10003035 [exp] 335 / 1e-115 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344100 [exp] 498 / 1e-179 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.006G165400 [exp] 394 / 2e-138 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 387 / 1e-135 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 384 / 3e-134 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 379 / 1e-132 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 359 / 9e-125 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G095300 [exp] 337 / 3e-116 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.007G023200 [exp] 149 / 6e-43 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 47 / 6e-06 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10014621 pacid=23170873 polypeptide=Lus10014621 locus=Lus10014621.g ID=Lus10014621.BGIv1.0 annot-version=v1.0 ATGCCCTTGATGAGCGTGTTACATGATGGTGATGGATTCCCCAGGATTGTTCTCGAAGACCCTTCTGGTTCTTCAGCTGAGGTGCTTTTATATGGGGGGC AGGTTGTCTCCTGGAAGAATGAAAGGAGAGAAGAACTTCTCTTTATGAGTAGCAAGGCTATTTGGAAGCCACCTAAGGCAATCAGAGGAGGAATACCTGT CTTCTTTCCTCAGTTTGGCAATCTTGGTTGTTTGGAGAGAAATGGATTTGCTAGGAATAGATTCTGGGCAATAGACAACGATCCTTCACCTTTGCCTCCA TCGAACAATCACTCATCGGTCGATTTGTTATTGAAGTCAACTAATGAGGACCTGAAGATCTGGCCGCGCAGCTTCGAGTTGCGGCTTCGTGTCACTCTTA GTGCTGGCAAGCTCACTTTGATACCTCGTGTGAGAAATACAGACAATAGACCTTTCTCTTTCACATTCGCACTCAGAAACTATCTATCCGTATCAGATAT TAGTGAAGTGCGGGTCGAAGGCTTGGAAACACTCGATTACTTAGACAATCTCGTGCAGCGAAAGAGGTTCACTGAACAAGCAGATGCAATCACTTTCGAT GGCGAGGTTGATAGAGTATACTTGAGCACGCCACAGAAGATCGCCATTATAGACCATGAGAAGAAGAGAACCCTCGTGCTGCGTAAGGATGGAATGTCAG ATGCAGGTATGTGGAATCCTTGGGACAAAAGGGCCAAAGTAGTGCCTGATTTGGGATACGACGACTACAAGACCATGTTATGTGTCGAATCTGCGGTCAC CGAAACCCCAATTGTCCTTAAACCTATGGAAGAATGGAAAGGCTATCAAGAGCTCTCAACTGTTTCGTCAAGTTACTGCAGCGGCCAGTTGGATCCCCGA AAGGTTCTTTACGGTTCCTAA
AA sequence Show only first row Show all	>Lus10014621 pacid=23170873 polypeptide=Lus10014621 locus=Lus10014621.g ID=Lus10014621.BGIv1.0 annot-version=v1.0 MPLMSVLHDGDGFPRIVLEDPSGSSAEVLLYGGQVVSWKNERREELLFMSSKAIWKPPKAIRGGIPVFFPQFGNLGCLERNGFARNRFWAIDNDPSPLPP SNNHSSVDLLLKSTNEDLKIWPRSFELRLRVTLSAGKLTLIPRVRNTDNRPFSFTFALRNYLSVSDISEVRVEGLETLDYLDNLVQRKRFTEQADAITFD GEVDRVYLSTPQKIAIIDHEKKRTLVLRKDGMSDAGMWNPWDKRAKVVPDLGYDDYKTMLCVESAVTETPIVLKPMEEWKGYQELSTVSSSYCSGQLDPR KVLYGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14500			aldose 1-epimerase family prot...		Lus10014621 [exp]	0	1
AT4G17540			unknown protein		Lus10040155 [exp]	6.0	0.8810
AT2G38430			unknown protein		Lus10003276 [exp]	6.5	0.8677
					Lus10016944 [exp]	7.1	0.9147
AT3G18260			Reticulon family protein (.1)		Lus10032451 [exp]	9.6	0.9089
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10038761 [exp]	10.4	0.8347
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	11.2	0.8859
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	14.1	0.9086
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10009430 [exp]	15.8	0.8636
AT1G13920			Remorin family protein (.1)		Lus10026649 [exp]	15.9	0.9063
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10031386 [exp]	17.4	0.8941

Compare expression of checked genes

Lus10014621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.