Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04540 668 / 0 Beta-ketoacyl synthase (.1) AT5G46290 243 / 5e-75 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT1G74960 241 / 1e-73 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033810 [exp] 855 / 0 AT2G04540 705 / 0.0 Beta-ketoacyl synthase (.1) Lus10034886 [exp] 248 / 8e-76 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10025390 [exp] 245 / 1e-75 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10040883 [exp] 244 / 3e-75 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10001814 [exp] 241 / 8e-73 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10003195 [exp] 237 / 2e-72 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10004935 [exp] 231 / 1e-71 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10033422 [exp] 224 / 2e-67 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10015267 [exp] 220 / 2e-62 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219500 [exp] 714 / 0 AT2G04540 640 / 0.0 Beta-ketoacyl synthase (.1) Potri.006G138000 [exp] 256 / 6e-79 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.001G088700 [exp] 249 / 7e-77 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.011G079700 [exp] 248 / 7e-77 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.004G131500 [exp] 246 / 4e-76 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.003G142000 [exp] 243 / 1e-74 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.018G062900 [exp] 239 / 1e-72 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF00109 [flax] [poplar] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [flax] [poplar] Thiolase PF02801 [flax] [poplar] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014622 pacid=23149615 polypeptide=Lus10014622 locus=Lus10014622.g ID=Lus10014622.BGIv1.0 annot-version=v1.0 ATGGCAATTAGTTCTTCATGCCGTAAAATTCAAATCCCATCTCGGTTCCAACTCTCCCGTCACTTCGCCACTTCTTCATCCGCCTTTCAGAATCTCGAAC CGCCTCCTCCCTTCATTCCTCGCCGAGTTGTAGTCACTGGTTTGGGAATGGTAACACCATTGGGGTGCGGAGTGGAGACAACATGGAAACGATTGATAGA TGGAAATTGCGGGATAAGGCAAATTAGCCCTGAGGATCTGAAAATGGGTACCTTTGATGAAGAGACAAAGATGCGGACTTTCGATCAGCTGACCTCCAAA GTTGCTGCAGTTGTACCCTGTGGGAATGCTCCTGGCGAGTTCTGCGAGGACCTATGGCTTAATTCCAAGGAGCATCGATCCATTGCAAGGTTTATAGCTT ATGCATTATGTGCCGCAGATGAGGCTTTGAAAGATGCACAATGGGAACCGACGCAAGAGGAGCAGAAGGAAAGAACGGGCGTCTCAATTGGTGGAGGAAT CGGCAGCATCACAGATATACTAGATGCATCACAAATGATCTGTGAGAAAAGAGTTCGTCGACTTAGTCCATTCTTCATACCTCGGATACTGATAAACATG GCTTCTGGTCATGTGAGCATCAAGTATGGATTCCAGGGACCGAACCATGCCGCTGTGACTGCCTGTGCTACTGGAGCACATTCCATTGGCGACGCAGCAA GAATGATTCAATTTGGAGATTGTGATGTTATGGTGGCTGGCGGCACAGAATCCAGCATAGATGCATTATCAATAGCTGGGTTTTGCAAGTCTAGAGCTCT AACATCGAAGTACAATTCAACACCTCTTGAAGCTTCACGCCCTTTCGATTCTGAGCGGGATGGATTTGTGATAGGGGAAGGCTCTGGCATAGTGGTGTTA GAAGAACTCGAGCATGCAAAACGAAGGGGCGCAAAGATATATGCCGAGCTTCGTGGATATGGGATGTCAGGAGATGCTCATCACATCACTCAGCCACCCA CGAGTGGAAAAGGAGCCATTCTGGCTATGACTCGTGCCTTACAGCAGTCAGGTCTGCAGCCCAACCAAGTCGATTATGTCAATGCCCATGCTACTTCTAC ACCTTTAGGTGATGCTGTAGAAGCCACGGCCATCAAAACTCTATTTGGAGAACATGCGGCCTCAGGAGCTCTGGCATTTTCTTCCACAAAGGGAGCCATT GGTCATCTCCTTGGAGCAGCTGGTGCTGTTGAAGCAATCTTCACAGTGTTAGCCATGCACAAGGGAATCGCACCTTTGACTCTTAACCTAACTAAACCTG ATCCAGTGTTCAAAGCAAACTACATGCCCCTGAGTTCTACACGAGAGATTCCTATCAGAGTGGCTATATCTAATTCATTTGGCTTCGGAGGGACAAATGC ATCTCTGTTATTCTCCTCGGCAACATGA
AA sequence Show only first row Show all	>Lus10014622 pacid=23149615 polypeptide=Lus10014622 locus=Lus10014622.g ID=Lus10014622.BGIv1.0 annot-version=v1.0 MAISSSCRKIQIPSRFQLSRHFATSSSAFQNLEPPPPFIPRRVVVTGLGMVTPLGCGVETTWKRLIDGNCGIRQISPEDLKMGTFDEETKMRTFDQLTSK VAAVVPCGNAPGEFCEDLWLNSKEHRSIARFIAYALCAADEALKDAQWEPTQEEQKERTGVSIGGGIGSITDILDASQMICEKRVRRLSPFFIPRILINM ASGHVSIKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDCDVMVAGGTESSIDALSIAGFCKSRALTSKYNSTPLEASRPFDSERDGFVIGEGSGIVVL EELEHAKRRGAKIYAELRGYGMSGDAHHITQPPTSGKGAILAMTRALQQSGLQPNQVDYVNAHATSTPLGDAVEATAIKTLFGEHAASGALAFSSTKGAI GHLLGAAGAVEAIFTVLAMHKGIAPLTLNLTKPDPVFKANYMPLSSTREIPIRVAISNSFGFGGTNASLLFSSAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10014622 [exp]	0	1
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021971 [exp]	6.2	0.8104
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	7.1	0.8247
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	8.7	0.8159
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10028486 [exp]	11.0	0.8093
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10040530 [exp]	13.4	0.7689
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	14.9	0.8322
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	21.6	0.7431
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	22.6	0.7910
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10033635 [exp]	23.0	0.8106
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	23.2	0.8189

Compare expression of checked genes

Lus10014622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.