Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04530 544 / 0 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT1G74700 359 / 1e-124 NUZ, TRZ1 tRNAse Z1 (.1) AT2G01730 44 / 0.0002 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033809 [exp] 668 / 0 AT2G04530 540 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10023618 [exp] 328 / 5e-112 AT1G74700 437 / 3e-156 tRNAse Z1 (.1) Lus10024249 [exp] 326 / 4e-111 AT1G74700 433 / 1e-154 tRNAse Z1 (.1) Lus10037338 [exp] 48 / 9e-06 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10035763 [exp] 48 / 1e-05 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160600 [exp] 542 / 0 AT2G04530 528 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.015G064400 [exp] 346 / 5e-119 AT1G74700 462 / 4e-166 tRNAse Z1 (.1) Potri.010G106200 [exp] 46 / 3e-05 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014623 pacid=23149622 polypeptide=Lus10014623 locus=Lus10014623.g ID=Lus10014623.BGIv1.0 annot-version=v1.0 ATGCAAACTTTTCTTCCCATTTCACCCTCAAATCCCCCTTCAATTTCCCATTTCCACCACCACCCAGTTCCCCTACCTACAGCAACAGCTATTCACTTCC GGAACGTCGCAAATTCCACCACCGCCAGGGCTTCAGGGGGCTACCTGTCGTCCCTCAGCCGCGTAATTGACGAGGAAGAAGAGTACAGGAAAGCTCGCGC CGCCGTCATCCGTAAAGGCGTCGACTTGGAAGGCTACACCATCGAGGGACTCTCCGTAGGAGGCCACGAGACTTGCGTTATAATCCCTGAATTGAAGTGT GCTTTCGATATTGGGAGATGCCCTTCTAGAGCCATTCAACAGAACTTCCTCTTCATCACCCATGGCCATCTTGATCACATCGGAGGGTTGCCAATGTATG TGGCTAGCCGGGGTCTCTACAACTTGAAACCTCCCACCATATTTGTGCCTCCTTCACTCAAAGAGGATGTTGAGAAGTTGCTTGACATTCACAGAAGCAT GGGCCAAGTTGAACTGAATGCGGAGTTGGTTGCCTTGGACATAGGTGAAACATATGAACTGCGTAATGACATTGTGGTTAGGCCATTTAGGACACATCAT GTCATTCCCAGTCAGGGGTATGTTGTGTACTCCCTTAGGAAGAAGTTGAAGAAGCAATATAGTCAAATGAAAGGAAAGCAGATTGAGAAATTGAAGAAAT CTGGAGTAGAGATCACAGACATAATAATGTCTCCGGAGATTGCGTTTACTGGGGACACAACTTCAGATTACATGCTTGATCCTCGTAATTCAGATGCATT GAGAGCCAAAGTTCTTATAACTGAGGCAACCTTCCTGGATGAAGGGTTTAGTGTTGAGCATGCACGGCAACATGGTCATACCCATTTGTCCGAGATCATT AAGAATGCAGAATGGATTCGTAGCAAAACAGTCTTGCTAACTCACTTTTCCTCTCGCTATAGCATAGAGGACATCCGAGCAGCTGTTATGAAGTTGCAAT CTAAAGTTTCTGCGAAAGTTATTCCTATGACAGAAGGTTTCAAGTCGATTCATACATAG
AA sequence Show only first row Show all	>Lus10014623 pacid=23149622 polypeptide=Lus10014623 locus=Lus10014623.g ID=Lus10014623.BGIv1.0 annot-version=v1.0 MQTFLPISPSNPPSISHFHHHPVPLPTATAIHFRNVANSTTARASGGYLSSLSRVIDEEEEYRKARAAVIRKGVDLEGYTIEGLSVGGHETCVIIPELKC AFDIGRCPSRAIQQNFLFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSLKEDVEKLLDIHRSMGQVELNAELVALDIGETYELRNDIVVRPFRTHH VIPSQGYVVYSLRKKLKKQYSQMKGKQIEKLKKSGVEITDIIMSPEIAFTGDTTSDYMLDPRNSDALRAKVLITEATFLDEGFSVEHARQHGHTHLSEII KNAEWIRSKTVLLTHFSSRYSIEDIRAAVMKLQSKVSAKVIPMTEGFKSIHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10014623 [exp]	0	1
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	2.2	0.9475
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	4.0	0.9456
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10038523 [exp]	6.0	0.9177
AT4G26370			antitermination NusB domain-co...		Lus10013400 [exp]	6.2	0.9325
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	6.3	0.9320
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038809 [exp]	7.7	0.9201
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	8.8	0.9197
					Lus10038585 [exp]	10.1	0.9199
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Lus10039499 [exp]	12.0	0.9170
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	12.0	0.9194

Compare expression of checked genes

Lus10014623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.