Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04970 572 / 0 lipid-binding serum glycoprotein family protein (.1.2) AT3G20270 343 / 1e-112 lipid-binding serum glycoprotein family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033808 [exp] 952 / 0 AT1G04970 601 / 0.0 lipid-binding serum glycoprotein family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160700 [exp] 637 / 0 AT1G04970 615 / 0.0 lipid-binding serum glycoprotein family protein (.1.2) Potri.001G358800 [exp] 469 / 1e-162 AT1G04970 494 / 1e-172 lipid-binding serum glycoprotein family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0648 [flax] [poplar] Aha1_BPI PF02886 [flax] [poplar] LBP_BPI_CETP_C LBP / BPI / CETP family, C-terminal domain CL0648 [flax] [poplar] Aha1_BPI PF01273 [flax] [poplar] LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014625 pacid=23149628 polypeptide=Lus10014625 locus=Lus10014625.g ID=Lus10014625.BGIv1.0 annot-version=v1.0 ATGGCGTCGCTTACTCCTCTGTTCTTCATCTTCTTCCTGGTCTTAGCTTCCTACCCAAATTCGCAGAAAGCCCAATCGATCGAAGGAAGTAGCAGCAATG GCCAAGGTTTCATGGCTATGGAGATATCGGAGAGGGGCCTCGATTTTCTCAAGGACTTGCTCATAAGCAAGGCGATTGCTTCGACCATACCTCTGAAATT GCCTAGGCTTGAGAAATCTGCCAAGTTTCCCTTCGTGGGTACTGTTCAGATGGTGTTGACAGACATCATTATCTATGAAGTAGATGTCTTGTCTTCTTAT GTTAAGCCAGGAGATACTGGCGTTGCAGTTGTTGCTTCCGGAATGACTTGTAATTTGAGCATGAATTGGTATTACAAGTATGATACTTGGCTTCTACCTA TCGAGATTTCTGATAAAGGGAACGCTTCTGTTCAGGTTGAAGGAATGGAAGTAGGGCTTACATTGGGGTTAAAGAATCAGAATGGAAGCCTGAAGCTGTC AGTTATGGAGTGTGGCTGCATGGTTAAGGACATCAAGATAAATGTTAAGGGAGGAGCATCATGGTTCTATCAAGGAATCTTTGATGCATTTGCAGGCCAC ATTGCATCTGCAGTTGAAAGCACCATTACCACGAAGCTTGGAGATGGGATAGTGAAGCTTGATGCGTTTCTTCGGTCTCTTCCTAAAGAAATTCCAGTAG ATGACATTGCTGCTTTAAATGTGACTTTCTTGGAAGATCCTTCATTGACCAGCAACTCCATTCAGTTTGACATAAATGGTTTATTCATGGCGAGGAAAAA TCCATCAACATCCATAAATCATTACTTGAATTCACTATCATCGGTTCTCTGCTCGGATCCGTCTAGAATGCTTGGGATTAAACTGGATGAAGCTGTTTTT AATTCTGCGTGCACGTTATACTATGATGCAAAGTTCATGCAGTGGATTGTGGATAAAGTCCCAGATCAATCTCTTCTGAACACTGCCAGATGGAGATTCA TCGTCCCGAAACTTTACAAGAAGTATCCAAACCACGACCTCAACTTAAACATCTCTTTGTCGTCCCCGCCAGTTATCAGCTTGTTGGACCAGAAAATTGA CGCAACAGTAAATGCAGTCTTGATCATTAACGTTCTGGATGTAGATCAAGTGATACCAGTTGCTTGCATTTCTTTTGCAGTGAGCCGCTCGGCCTCTGTA AGACTGTCGGGGAATAACCTTGCTGGGAGCATGAACCTGGATGGCTTCTCAATGTCACAGAAGTGGAGTGAGATTGGGAATGTTCCATTGTTTGTCATTC AGCCTGTGATGTGGACAGCAATAGAAACAGTGTTCTTGCCATACGTGAACGCCCACCTTGCGCAGGGTATACCGTTGCCAATCATACATGGTTTCACTCT GCAGAATGCAGAAACCATCACTGCAAGCTCAAAGGTCACTATCTGTGGAGATGTGGAGTACAAGGATGAGCTTGACCAGATTGTATTACTGAACTGA
AA sequence Show only first row Show all	>Lus10014625 pacid=23149628 polypeptide=Lus10014625 locus=Lus10014625.g ID=Lus10014625.BGIv1.0 annot-version=v1.0 MASLTPLFFIFFLVLASYPNSQKAQSIEGSSSNGQGFMAMEISERGLDFLKDLLISKAIASTIPLKLPRLEKSAKFPFVGTVQMVLTDIIIYEVDVLSSY VKPGDTGVAVVASGMTCNLSMNWYYKYDTWLLPIEISDKGNASVQVEGMEVGLTLGLKNQNGSLKLSVMECGCMVKDIKINVKGGASWFYQGIFDAFAGH IASAVESTITTKLGDGIVKLDAFLRSLPKEIPVDDIAALNVTFLEDPSLTSNSIQFDINGLFMARKNPSTSINHYLNSLSSVLCSDPSRMLGIKLDEAVF NSACTLYYDAKFMQWIVDKVPDQSLLNTARWRFIVPKLYKKYPNHDLNLNISLSSPPVISLLDQKIDATVNAVLIINVLDVDQVIPVACISFAVSRSASV RLSGNNLAGSMNLDGFSMSQKWSEIGNVPLFVIQPVMWTAIETVFLPYVNAHLAQGIPLPIIHGFTLQNAETITASSKVTICGDVEYKDELDQIVLLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	0	1
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	1.4	0.9747
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006461 [exp]	3.0	0.9686
AT1G44770			unknown protein		Lus10014131 [exp]	3.7	0.9689
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	3.9	0.9672
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	4.0	0.9627
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	4.0	0.9681
AT3G50150			Plant protein of unknown funct...		Lus10039369 [exp]	4.5	0.9526
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	4.6	0.9645
AT5G41630			F-box/RNI-like superfamily pro...		Lus10011268 [exp]	4.6	0.9522
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10008507 [exp]	4.8	0.9517

Compare expression of checked genes

Lus10014625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.