Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04960 295 / 4e-99 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G27000 164 / 3e-48 Protein of unknown function (DUF1664) (.1) AT2G02730 154 / 2e-44 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G24265 70 / 3e-13 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) AT1G24267 60 / 8e-10 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033807 [exp] 319 / 2e-109 AT1G04960 218 / 2e-70 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Lus10036718 [exp] 181 / 1e-54 AT1G27000 272 / 1e-90 Protein of unknown function (DUF1664) (.1) Lus10013269 [exp] 178 / 1e-53 AT1G27000 254 / 8e-84 Protein of unknown function (DUF1664) (.1) Lus10037210 [exp] 159 / 2e-45 AT1G27000 252 / 8e-82 Protein of unknown function (DUF1664) (.1) Lus10030793 [exp] 148 / 3e-39 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10011347 [exp] 76 / 3e-15 AT1G24265 226 / 2e-71 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) Lus10003127 [exp] 67 / 2e-12 AT1G24265 202 / 6e-63 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219300 [exp] 371 / 5e-129 AT1G04960 325 / 7e-111 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.014G160800 [exp] 363 / 7e-126 AT1G04960 309 / 6e-105 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.008G149000 [exp] 175 / 3e-52 AT1G27000 327 / 3e-112 Protein of unknown function (DUF1664) (.1) Potri.010G092700 [exp] 173 / 1e-51 AT1G27000 331 / 1e-113 Protein of unknown function (DUF1664) (.1) Potri.003G169200 [exp] 81 / 7e-17 AT1G24267 214 / 5e-67 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.001G058700 [exp] 80 / 1e-16 AT1G24267 211 / 1e-65 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07889 [flax] [poplar] DUF1664 Protein of unknown function (DUF1664)
Representative CDS sequence Show only first row Show all	>Lus10014626 pacid=23149639 polypeptide=Lus10014626 locus=Lus10014626.g ID=Lus10014626.BGIv1.0 annot-version=v1.0 ATGGCTATGCAGACTGCAGTCTCCTCAAAAGTGCTCATTCTTGTTGGCGCTAGCGCAGGTTTGACGAGTTCGATTATACTGAAGAATGGAAGGCTGTCTG AGGTTATTGATCAGCTGCAGGAATTGCTCAAAGGAGTTTCTGATGTTGAAACGTCACCGTATAAAGTCGATACTGCTATTCTTGCAGCTCAGATTCGCCA ATTGGCTCAAGAAATTAAGGAGATATCCATGTCCAATCCTGTAACCATCTTCAATGGCAATTCTGAAAGCGGAAGCTTAGCATCTTATATCATGCCAGCT GCAGCAGTGGGAGCAATGGGTTATTGTTACATGTGGTGGAAGGCAAAGCAGGGTGGGTCATTATCAGATGTAATGTTTGTGACTAAGAACAATATGAAAA ATGCAGTCGAATCTGTCTCAAAACAATTGGAGCATCTATCTGATTCACTTGCTAATACAAGGAAGCATCTGAGTAATAGGCTCGAAAACTTGGACTGGAA AGTGGACGAGCAAATAGAGACATCTAAGCAAATTGCTAGTAATGTGGATGATTTGAATTCAAACATTTCCCAAATTGGATTTGATGTTGGAACAATTCAT CATATGATAGCTGGCCTGGAAGGGAAACTTGATCTTTTGGAAAATAAACAGTGTCTGAAATTCAGTCAAACCCCACTCACTGAATCCTCGTTGCAGGATG TAACAAATGCAGGTCTTTGGTACTTATGCCAGGTCGCTGATGGAATGAAAGACGGGTTTGGCAAAATAATATCCAAGGAACTTGGTCCGAAGGTTGCAAG CCCTGCACTTACCGGCAGTGACGAGATGTCACTAAAGGGCCTTCAGTTCCTAGCTGATGCTCAGGAAGATTCGTTTGCTGCCACAAAGTTGATAGAAAAG GCAAAGACAGCTGATCCTGATGCCATCACTACCCTCCCAGGTGAAAAACTTAGAAGCACGAGAACAAGATTCGTTCACAGGGCATATCCTGTTGGATTTT CTGGTTTAGGCACCGGAGCTTGA
AA sequence Show only first row Show all	>Lus10014626 pacid=23149639 polypeptide=Lus10014626 locus=Lus10014626.g ID=Lus10014626.BGIv1.0 annot-version=v1.0 MAMQTAVSSKVLILVGASAGLTSSIILKNGRLSEVIDQLQELLKGVSDVETSPYKVDTAILAAQIRQLAQEIKEISMSNPVTIFNGNSESGSLASYIMPA AAVGAMGYCYMWWKAKQGGSLSDVMFVTKNNMKNAVESVSKQLEHLSDSLANTRKHLSNRLENLDWKVDEQIETSKQIASNVDDLNSNISQIGFDVGTIH HMIAGLEGKLDLLENKQCLKFSQTPLTESSLQDVTNAGLWYLCQVADGMKDGFGKIISKELGPKVASPALTGSDEMSLKGLQFLADAQEDSFAATKLIEK AKTADPDAITTLPGEKLRSTRTRFVHRAYPVGFSGLGTGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04960			Protein of unknown function (D...		Lus10014626 [exp]	0	1
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10041420 [exp]	1.0	0.9060
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	1.7	0.8847
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	2.4	0.8971
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	4.0	0.8560
AT1G17030			unknown protein		Lus10024442 [exp]	6.9	0.8431
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	7.7	0.8834
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10028143 [exp]	7.7	0.8443
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	7.9	0.8589
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10022524 [exp]	10.5	0.8514
AT5G41560			unknown protein		Lus10028758 [exp]	11.2	0.8392

Compare expression of checked genes

Lus10014626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.