Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04520 209 / 8e-71 Nucleic acid-binding, OB-fold-like protein (.1) AT5G35680 207 / 5e-70 Nucleic acid-binding, OB-fold-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033806 [exp] 219 / 2e-74 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10000920 [exp] 216 / 3e-73 AT2G04520 252 / 1e-87 Nucleic acid-binding, OB-fold-like protein (.1) Lus10002264 [exp] 211 / 2e-71 AT2G04520 248 / 6e-86 Nucleic acid-binding, OB-fold-like protein (.1) Lus10020713 [exp] 140 / 1e-43 AT2G04520 169 / 4e-55 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029827 [exp] 139 / 6e-43 AT2G04520 168 / 9e-55 Nucleic acid-binding, OB-fold-like protein (.1) Lus10042438 [exp] 94 / 2e-25 AT2G04520 100 / 5e-28 Nucleic acid-binding, OB-fold-like protein (.1) Lus10034249 [exp] 42 / 5e-05 AT2G40780 197 / 4e-65 Nucleic acid-binding, OB-fold-like protein (.1.2) Lus10029014 [exp] 40 / 0.0002 AT2G40780 199 / 4e-66 Nucleic acid-binding, OB-fold-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219200 [exp] 216 / 2e-73 AT2G04520 198 / 2e-66 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G160900 [exp] 213 / 2e-72 AT2G04520 200 / 3e-67 Nucleic acid-binding, OB-fold-like protein (.1) Potri.002G031700 [exp] 167 / 3e-54 AT2G04520 176 / 1e-57 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G093801 [exp] 77 / 1e-19 AT2G04520 76 / 2e-19 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01176 [flax] [poplar] eIF-1a Translation initiation factor 1A / IF-1
Representative CDS sequence Show only first row Show all	>Lus10014627 pacid=23149625 polypeptide=Lus10014627 locus=Lus10014627.g ID=Lus10014627.BGIv1.0 annot-version=v1.0 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAATGAGGCTGATGACGAGAAGCGTGAGCTGATCTTTAAGGAAGACGGGCAGG AGTATGCTCAGGTGATGCGCATGCTCGGTAATGGCCGCTGTGAAGCTACATGCATTGATGGCATCAAACGCCTATGCCATATTCGTGGGAAGATGCACAA GAAGGTCTGGATCGCAGCTGGTGATATAATCCTTGTTGGGCTCAGGGATTATCAAGATGACAAGGCTGATGTTATCCTCAAGTACATGCCGGATGAAGCC AGGCTTCTCAAGGCATACGGTGAACTTCCGGAGAATACCCGTCTCAATGAGGGTATTGCCGGAGGTATTGATGAGGAAGATGAGGGTGCTATTGACGACT ATGTTGAGTTTGAAGATGAAGACATCGATAAAATCTAA
AA sequence Show only first row Show all	>Lus10014627 pacid=23149625 polypeptide=Lus10014627 locus=Lus10014627.g ID=Lus10014627.BGIv1.0 annot-version=v1.0 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVMRMLGNGRCEATCIDGIKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA RLLKAYGELPENTRLNEGIAGGIDEEDEGAIDDYVEFEDEDIDKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10014627 [exp]	0	1
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	1.7	0.9298
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	5.3	0.9261
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	5.5	0.9142
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10010489 [exp]	6.7	0.9143
AT5G25940			early nodulin-related (.1)		Lus10002236 [exp]	7.1	0.9058
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	14.7	0.9158
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	16.2	0.9189
AT4G34270			TIP41-like family protein (.1)		Lus10020231 [exp]	16.5	0.8762
AT1G71840			transducin family protein / WD...		Lus10031629 [exp]	18.0	0.8960
AT5G13070			MSF1-like family protein (.1)		Lus10031832 [exp]	19.7	0.8600

Compare expression of checked genes

Lus10014627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.