Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04950 581 / 0 EMB2781, ATTAF6, TAF6, TAFII59 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) AT1G54360 436 / 1e-148 TAF6b4, TAF6b3, TAF6b2, TAF6b1 TBP-associated factor 6B4, TBP-ASSOCIATED FACTOR 6B2, TBP-ASSOCIATED FACTOR 6B1, TBP-ASSOCIATED FACTOR 6B (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033805 [exp] 862 / 0 AT1G04950 686 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Lus10016578 [exp] 543 / 0 AT1G04950 617 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Lus10002443 [exp] 531 / 0 AT1G04950 603 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G161100 [exp] 687 / 0 AT1G04950 639 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Potri.001G359400 [exp] 555 / 0 AT1G04950 526 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF02969 [flax] [poplar] TAF TATA box binding protein associated factor (TAF) CL0020 [flax] [poplar] TPR PF07571 [flax] [poplar] TAF6_C TAF6 C-terminal HEAT repeat domain
Representative CDS sequence Show only first row Show all	>Lus10014628 pacid=23149623 polypeptide=Lus10014628 locus=Lus10014628.g ID=Lus10014628.BGIv1.0 annot-version=v1.0 ATGAGCATCGTACCAAAAGAGACAATCGAAGTCCTAGCACAGAGCACCGGAATCAGCAATTTGTCTTCCGATGCCGCTCTCGCCCTCGCTCCCGACGTCG AGTATCGCCTCCGGGAAATAATCCAAGAATCTATCAAATCCATGCGCCATTCCCGCCGCACTACCCTCACAACTGACGACGTCGACGCCGCTCTCAGCCT CAGAAATCTCGAGCCAGTGTACGGATTTGCATCGGGAGGGCCTTTGCGGTTCAAGCAAGCTATTGGTCACAAGGATTTGTTCTACATTGACGACACAGAT GTCGACTTTAAGGATGTAATTGAAGCACCATTACCTAAAGCGCCACTTGATTCGTCAGTTGTTTGTCACTGGCTAGCTATAGAAGGGGTGCAGCCTGCTA TCCCTGAAAATGCACCTTTGAGAGTTATTGCTCCTCCTTCTGATGCCAAACTCTCTGAACCAAAAGATCAACTTCCCGTGGATATCAAGTTGCCGGTTAA ACATGTATTGTCAAGGGAGTTACAGCTATACTATGAAAAAATCAAAGAACTTGCTTTGAGAAGGTCTGTTACTCCCCTCTTTCAAGAAGCATTAGTGAGC CTGGCTACTGACTCAGGGCTTCATCCGCTGGTTCCTTATTTCACTTACTTCATAACTGATGAGGTCTCCCGTGGCTTGCATAACTTCTCCCTTCTTTTTG CTCTGATGCGCGTTGTTTGGAGTCTTCTGCAGAATCCCCACATACACATTGAGCCATACCTACACCAATTGATGCCATCTGTTGTGACATGCCTGGTTGC AAGACGGTTGGGGAATAGAGTAGCTGACAACCACTGGGAACTAAGGGACTACGCGGCTAACCTAGTTGCCTTGATTTGCAAAAGGTTTGGGCATGTTTAC CACTACCTACAGACGAGGCTAACGAAAACCTTGCTGAATGCACTTCTGGACCCAAAGAAGTCATTGACCCAGCATTATGGAGCAATTCAAGGATTGACGG CATTAGGCCCCAATGTGGTTCGCCTACTTCTACTACCAAACCTCGAGCCATACCTGCGGCTTCTAGAACCAGAGATGCTTCTTGAGAAGCAGAAGAACGA AATGAAGAGGCACGAGGCTTGGCGTATTTATGGGGCATTATTGTGTGCTTCCGGTCAATCTGCATACGAACGATTGAAATTGTTTCCACCTTTGCCGTCA CCTCCATCAAACGCAGTATGGAGGACCAACCACAAGGTGTTTGCAGGAAAACCTAATAACAAACGCAAAGGAACTGTAGAACTGTCGGGTCAGCCCATGG TGAAGAAGATAGCAACTGATGGCCCTATTGATACATCATCATCTGGTTCCTCGCCGCCCTCTCAAATGCAAATTGTTGCAGCAGGTGAACCTCAAAACGA TTGTAATGCTGGGCCATCAACCTCGGTCCCAGAATCAAGTAATGGCGGCGGGTCGAGCCAGAAAGTCGGGAGGACTAGTAAGAGAGATCAGCAAGTTGTA AAGAAGTCTGCCATTTTGGATCTAGTTTGGAAGGATGACCTGAATTGTGGACAACTTCTGGTCTCGTTGTTCGACCTGTTCGGTGAAGGCAGCCTATCCT TCATTCCAGCCCCTGAGATGTCGTTATTCTTGTGA
AA sequence Show only first row Show all	>Lus10014628 pacid=23149623 polypeptide=Lus10014628 locus=Lus10014628.g ID=Lus10014628.BGIv1.0 annot-version=v1.0 MSIVPKETIEVLAQSTGISNLSSDAALALAPDVEYRLREIIQESIKSMRHSRRTTLTTDDVDAALSLRNLEPVYGFASGGPLRFKQAIGHKDLFYIDDTD VDFKDVIEAPLPKAPLDSSVVCHWLAIEGVQPAIPENAPLRVIAPPSDAKLSEPKDQLPVDIKLPVKHVLSRELQLYYEKIKELALRRSVTPLFQEALVS LATDSGLHPLVPYFTYFITDEVSRGLHNFSLLFALMRVVWSLLQNPHIHIEPYLHQLMPSVVTCLVARRLGNRVADNHWELRDYAANLVALICKRFGHVY HYLQTRLTKTLLNALLDPKKSLTQHYGAIQGLTALGPNVVRLLLLPNLEPYLRLLEPEMLLEKQKNEMKRHEAWRIYGALLCASGQSAYERLKLFPPLPS PPSNAVWRTNHKVFAGKPNNKRKGTVELSGQPMVKKIATDGPIDTSSSGSSPPSQMQIVAAGEPQNDCNAGPSTSVPESSNGGGSSQKVGRTSKRDQQVV KKSAILDLVWKDDLNCGQLLVSLFDLFGEGSLSFIPAPEMSLFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10014628 [exp]	0	1
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10022752 [exp]	1.4	0.8308
AT1G16900			Alg9-like mannosyltransferase ...		Lus10028153 [exp]	15.4	0.8224
AT1G80640			Protein kinase superfamily pro...		Lus10026091 [exp]	19.3	0.8211
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	25.9	0.8113
AT3G52270			Transcription initiation facto...		Lus10040084 [exp]	26.1	0.8063
AT2G15730			P-loop containing nucleoside t...		Lus10027910 [exp]	30.6	0.7624
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	46.9	0.7951
AT4G22960			Protein of unknown function (D...		Lus10014145 [exp]	47.3	0.7347
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Lus10042726 [exp]	51.6	0.7975
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	53.8	0.8017

Compare expression of checked genes

Lus10014628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.