Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14820 678 / 0 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT5G67440 531 / 0 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT4G37590 530 / 0 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT2G23050 501 / 4e-173 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT4G31820 452 / 1e-152 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT1G67900 424 / 7e-141 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G26490 356 / 5e-115 Phototropic-responsive NPH3 family protein (.1) AT5G03250 352 / 1e-113 Phototropic-responsive NPH3 family protein (.1) AT5G47800 349 / 7e-113 Phototropic-responsive NPH3 family protein (.1) AT1G30440 342 / 1e-108 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033796 [exp] 1080 / 0 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 520 / 4e-179 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 516 / 2e-177 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 503 / 1e-171 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 457 / 2e-149 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 437 / 1e-145 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10039099 [exp] 374 / 9e-122 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 345 / 3e-110 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 345 / 3e-110 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295600 [exp] 870 / 0 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 840 / 0 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 677 / 0 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 543 / 0 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 514 / 2e-176 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.010G046800 [exp] 440 / 3e-147 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.008G186100 [exp] 434 / 8e-145 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.016G003700 [exp] 374 / 7e-122 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 373 / 1e-120 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.006G003000 [exp] 367 / 7e-120 AT5G47800 692 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10014632 pacid=23149631 polypeptide=Lus10014632 locus=Lus10014632.g ID=Lus10014632.BGIv1.0 annot-version=v1.0 ATGAAGTTTATGAAACTTGGATCCAAACCTGATTCCTTTCAGACCCATGAAGACAATATCTGGTTTGTGGCTACTGAGTTAGCAACTGATGTCACTGTTA CCGTTGGGGATGCCAAATTTTATCTTCACAAGTTTCCTCTACTTTCGAAAAGCGCTCGTTTGCAGAAGTATGTCGTGACAAGTAGTGGAGAAAACAGCGA CGAAGTTGACATTTCTGATATCCCTGGAGGGCCTGCTGCATTCGAGATCTGTGCCAAGTTTTGTTACGGGATGACTGTAACTCTCAATGCCTACAATGTC GTTGCTGCAAGATGTGCTGCCGATTACCTTGAAATGCATGAGTCCGTTGAGAAAGGCAACCTCATTTACAAAATCGATGTGTTCCTTAGCTCGAGTGTTT TCCGCAGCTGGAAAGATTCCATCATCGTCCTTCGAACTACCAACTCGATGTTGCCATTATCTGAAGACATCAAGATCGTTAGCCACTGCATTGAAGCGAT AGCTACCAGAGCCTGTGTTGATCCTTCGAGAGTTGATTGGTCCTACACGTATAATAGGAAGAAACTCCCCGAGGAAAATGGAGATGCAGCAAACTTGAAC GGGGTAAGAAGCCGTTTAGTGCCAGCAGACTGGTGGGTTGAGGACCTGTGTGAACTCGGCATTGACTTGTACAAGCGTGTTCTCATGACAATTCGAGCCA AGGCAGTACTACCTCATGAAGTGATTGGAGAAGCGTTGAAAGCTTACTCTTACAGAAGATTGCCAGGCATCAGCAAGGGTGTTATCCAATCTGAAGAACT TGCAAAGTATCGATCAACAGTTGACACAATTGTGGTGCTTTTGCCCGGAGAGCGAGGCAGTGTCTCGAGTAGCTTTCTGCTCAAGCTATTAAAAGCAGCC ATTTCTGTAGGCTCTGGTAATCTGACCAAGGAACAACTAGTAAGGAAAATTGGACTGCAGCTAGAGTCGGCTTCAGTGATTGACCTTCTGATACAAGCAA GCGAAGAGGAAAGCATGATGTATGATGTTGACATAGTTCAGAAAATTGTGCGGGGATTTCTAATGCAAGACCAGTTTGCTGAAGTTAATGAAACAGAAGT TAACGAGGTTCAGGACATGATGCAAGGACCAGGGATATTATCAGATGCATCAAAACTTATGGTAGCGAAAACAATCGATGGATACCTTGCTGAGATAGCC AAGGATCCCCAGCTACCAGTGTCCAAGTTCGTCGAGATTGCTGAGATGGTGTCTGGTGTCTCTAGGCCTGTACACGATGCTCTATATCGTGCCATTGATA CGTACCTCACAGAACATCCAGGTATCAGCAAGAGCGAGAGAAAGAAGATATGCAAGCTGATGGACTGCAAGAAGCTATCAGTTGAGGCATGCATGCACGC AGTACAAAACGAGAGGCTACCGATGAGAGTAGTAGTGCAAGTACTCTTCTTTGAACAGGTGAGAATATCTGCAACATCAGGATGTAGCACCCCTGACCTT CCCAAGAGCATCAGGGACCTAAACAATGGATCTCAGAGGAGCTCAAGATCAGCTGCTACAAACCCAGATGAGGATTGGGACGCATTAGCCACAGCAGATG AGCTGAAGGCCCTGAAAGCAGAGGTAGCGGCTTTAAGACTGAGGAATGGAGTTGGTAGTAGAAGCAGCAGTAGCAATAACATGGATAGAGGAGGTGCTAG CTACAGAATGAAAGGGTTGATGAAATCAAAGAAAGTGTTTGCAAAGCTGTGGTCAAGCAAAGGAGAGAAAGGTGGGGAACACAGCGGGTCAGATTCATCT GAGAGTCTTGGATCAACCACTAATGGTGGTGCTGCTGAAGAAGCTAAGTCAACACCTTCAAGAAACAGAAGAAGATCAGTCTCTTGA
AA sequence Show only first row Show all	>Lus10014632 pacid=23149631 polypeptide=Lus10014632 locus=Lus10014632.g ID=Lus10014632.BGIv1.0 annot-version=v1.0 MKFMKLGSKPDSFQTHEDNIWFVATELATDVTVTVGDAKFYLHKFPLLSKSARLQKYVVTSSGENSDEVDISDIPGGPAAFEICAKFCYGMTVTLNAYNV VAARCAADYLEMHESVEKGNLIYKIDVFLSSSVFRSWKDSIIVLRTTNSMLPLSEDIKIVSHCIEAIATRACVDPSRVDWSYTYNRKKLPEENGDAANLN GVRSRLVPADWWVEDLCELGIDLYKRVLMTIRAKAVLPHEVIGEALKAYSYRRLPGISKGVIQSEELAKYRSTVDTIVVLLPGERGSVSSSFLLKLLKAA ISVGSGNLTKEQLVRKIGLQLESASVIDLLIQASEEESMMYDVDIVQKIVRGFLMQDQFAEVNETEVNEVQDMMQGPGILSDASKLMVAKTIDGYLAEIA KDPQLPVSKFVEIAEMVSGVSRPVHDALYRAIDTYLTEHPGISKSERKKICKLMDCKKLSVEACMHAVQNERLPMRVVVQVLFFEQVRISATSGCSTPDL PKSIRDLNNGSQRSSRSAATNPDEDWDALATADELKALKAEVAALRLRNGVGSRSSSSNNMDRGGASYRMKGLMKSKKVFAKLWSSKGEKGGEHSGSDSS ESLGSTTNGGAAEEAKSTPSRNRRRSVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10014632 [exp]	0	1
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	1.7	0.8861
AT1G15420			unknown protein		Lus10030351 [exp]	10.0	0.8566
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	12.5	0.8483
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	13.0	0.8349
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10013998 [exp]	13.7	0.8389
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10012813 [exp]	14.0	0.8283
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	14.9	0.7824
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	18.5	0.8224
AT4G14320			Zinc-binding ribosomal protein...		Lus10010195 [exp]	21.7	0.8494
AT5G08420			RNA-binding KH domain-containi...		Lus10026187 [exp]	22.0	0.8336

Compare expression of checked genes

Lus10014632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.