Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 61 / 3e-11 Aminotransferase-like, plant mobile domain family protein (.1) AT2G04865 58 / 3e-10 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 54 / 6e-09 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 52 / 2e-08 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006165 [exp] 250 / 4e-85 AT5G45260 66 / 5e-12 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10008761 [exp] 221 / 2e-71 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10033313 [exp] 169 / 3e-52 AT1G17930 72 / 1e-13 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005957 [exp] 160 / 5e-49 AT1G48120 75 / 1e-14 hydrolases;protein serine/threonine phosphatases (.1) Lus10022091 [exp] 160 / 5e-46 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10027047 [exp] 152 / 6e-44 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10020970 [exp] 143 / 5e-41 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10004818 [exp] 135 / 4e-39 AT1G17930 56 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10021792 [exp] 129 / 2e-36 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10014633 pacid=23149620 polypeptide=Lus10014633 locus=Lus10014633.g ID=Lus10014633.BGIv1.0 annot-version=v1.0 ATGACCGACCAGTTGGACGAGGCACTGATCCACGCTTTTGTTGAGAGGTGGCAGCCATATACTAACACGTTCCACTTCATGATCGTTGATCTGCAGGCTG ATATAGTTAGGGCTCTCTGTATCCATTCCGGGGATTTGAAGTTGCCAGTTGGAGGCGCTGCAGGTGGTGATGCACGATACCCTTGGCTGAAGGGTGCTGC GATGCATGAGAAGTCGATGTTAGTCGTGGGGAGCGGTTTAGTGGATGAGGATGTATACAAGGTCTTCATGTTTTGTCTGCTGGGTTCGACTCTGTTCACT GATAAGTCCGCCGATCGTACTCGTATGGTGTTGTGGGAGTATTTTATGGGAGGCATGTCCACTGTGTCACGATATGCTTGGGGGACTGGGGCTCTAGCAT GGCTGTATCACGAGTTGGGTAAGCCGAGCAGGGCTAAGTGTAAGGGGATGGCGGGGAGCGTGTCTCTACTTCAGTCTTGA
AA sequence Show only first row Show all	>Lus10014633 pacid=23149620 polypeptide=Lus10014633 locus=Lus10014633.g ID=Lus10014633.BGIv1.0 annot-version=v1.0 MTDQLDEALIHAFVERWQPYTNTFHFMIVDLQADIVRALCIHSGDLKLPVGGAAGGDARYPWLKGAAMHEKSMLVVGSGLVDEDVYKVFMFCLLGSTLFT DKSADRTRMVLWEYFMGGMSTVSRYAWGTGALAWLYHELGKPSRAKCKGMAGSVSLLQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	0	1
					Lus10000529 [exp]	1.4	1.0000
					Lus10005514 [exp]	2.8	1.0000
					Lus10008001 [exp]	3.5	1.0000
AT5G27260			unknown protein		Lus10007175 [exp]	3.9	1.0000
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037633 [exp]	4.2	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	5.0	1.0000
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024903 [exp]	7.9	0.9876
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	7.9	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	8.5	1.0000
					Lus10004507 [exp]	8.8	0.8818

Compare expression of checked genes

Lus10014633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.