Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39960 605 / 0 GTP binding;GTP binding (.1) AT3G12080 151 / 5e-39 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT1G78010 63 / 3e-10 tRNA modification GTPase, putative (.1) AT5G11480 47 / 3e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G80770 44 / 0.0002 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G22870 43 / 0.0004 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027371 [exp] 156 / 2e-40 AT3G12080 874 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10002557 [exp] 155 / 2e-39 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10006309 [exp] 55 / 2e-07 AT1G78010 669 / 0.0 tRNA modification GTPase, putative (.1) Lus10029578 [exp] 53 / 5e-07 AT1G78010 677 / 0.0 tRNA modification GTPase, putative (.1) Lus10033794 [exp] 0 / 1 AT5G39960 258 / 5e-83 GTP binding;GTP binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230600 [exp] 688 / 0 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1) Potri.009G054200 [exp] 143 / 7e-36 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.002G092600 [exp] 61 / 2e-09 AT1G78010 688 / 0.0 tRNA modification GTPase, putative (.1) Potri.007G021900 [exp] 45 / 0.0001 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1) Potri.002G241100 [exp] 43 / 0.0006 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.005G209900 [exp] 42 / 0.001 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10014634 pacid=23149638 polypeptide=Lus10014634 locus=Lus10014634.g ID=Lus10014634.BGIv1.0 annot-version=v1.0 ATGTCTAGCTATCTGCTCCGAGCCCTTTCTTCACGAAAGAGGCAGGGCGATTCTGTGCTTCTCCACAACTTAATCATCCGCGCCAGCACTGGCAGCATAC CTAGAAGAGCCAATTTCGCCATACTCGCAGCCAATGGTGTTATCGCAGATGTAAAAGCAGAATATAGACCTTCGTTTAGCGATGCTTCCATTGAACATAA GAATCACTTCAAATCCTTGAGTTACAAGTTGTCTTCCTCAACCACTAGCGGTCATCTTTACCGCAGCTTTTGTTCCGGCTCTCAGACTGATAATAAGGAG TCAAGTTCTATCTCAATCAGTGATGTGGCAAGCGGAGAACTGGATCCTTCTTGCCTGGCTTCTCAGGATGCCGTTACTGTCAAAAAAGTTAAAGTTGTTC ACAAAAAACCGATTGATTTCACCAAGCTAGATGTCAATTTGCTTCCAATTGTCATTCTTGTTGGACGTCCCAATGTGGGAAAATCTGCCTTGTTTAACCG GTTGATCCGGAGGAGGGAGGCTCTAGTGTACAATACACCCGATGACCATGTTACACGAGATATAAGAGAAGGCATTGCTAAATTGGGCGATTTGCGGTTT AGAGTACTGGACTCAGCTGGCCTGGAAACAGAAGCAACTTCAGGATCTATTCTTCAGAGAACATCCAGCATGACTGCTAATGTGTTAGCAAAAACTCATT TTGCTGTGTTCATAATTGATGCCAGAGCGGGTCTCCATCCACTGGATATGGAGGTTGGGAAGTGGCTGCGGAAAAATGCACCTGGAATGATTCCTGTTGT GGTCTTGAATAAAGCTGAATTACTTTTCGATGGTAGAGAGTCTTTCAGTGAGGCTGCCGATGAGGTTCGTATGTTAGGATTCGGGGATCCGATCGCCATC TCTGCCGAGACTGGGCTGGGTATGACAGCACTTCACGAGGCTCTTAGGCCTTTGCTTGAAGAACATGTGCTACAAGTCTTGAACAGTAATAATGAGGATG ATGGCACGGGGCTCTGTAGTGACAGTAGTCTGGAAGAGGATGATGACTCTAAGTTGCCGCTCCAGTTAGCAATTGTAGGACGGCCAAATGTCGGGAAGTC AACCTTGCTGAATGCTTTGTTGCAGGAAGAGCGAGTGCTTGTGGGTCCAGAGGCTGGCTTGACTAGAGATTCTGTTAGAGCTCAGTTCGACTTTCAAGGG AGAACTGTCGATACAGCAGGTTGGTTGCACAGGACAAAGGATGAGAAAAGACCATCATCGTTGAGCATAATGCAATCAAAAAAGAATTTGATGAGGGCTC ACGTGATAGCTTTGGTACTTGATGCAGAACAGATAGCAGAAGCTAGACGTAGTATGACACATGCGGAAGTAGTTATAGCAAGACGGGCAGTGGAAGAAGG TCGTGGATTGGTTGTTGTGGTGAACAAGATGGATCTTCTTAAAGGAAAGCTATTTGATAAGGTCATCGAAACTGTTCCCCTGGAAATTCAGACAGTTATA CCCCAGGTTACAGGAATACCGGTTGTATTCACTTCAGCAATAGAAGGTAAAGGTAGGATACCTGTGATGCGGCAGGTGATCGAGACGTATGATAAATGGT GCTCAAGATTATCGACGGCTAGATTGAACCGTTGGATACGCAAGTGTTTATCATTGATTGAATGGGTTTTTTATGTTTCACGGTCAGGTTATGAGCAGGC ATTCGTGGAAAGGCGAGGGCACGCAACCAAAGATAAAGTACTTGACCCAGGTGAAGGCTCGTCCACCTACATTTGTTGCCTTCACAAGTGGGAAGAAGCA GATTTCAGAATCGGAGATTCGGTTCCTGACTAA
AA sequence Show only first row Show all	>Lus10014634 pacid=23149638 polypeptide=Lus10014634 locus=Lus10014634.g ID=Lus10014634.BGIv1.0 annot-version=v1.0 MSSYLLRALSSRKRQGDSVLLHNLIIRASTGSIPRRANFAILAANGVIADVKAEYRPSFSDASIEHKNHFKSLSYKLSSSTTSGHLYRSFCSGSQTDNKE SSSISISDVASGELDPSCLASQDAVTVKKVKVVHKKPIDFTKLDVNLLPIVILVGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGIAKLGDLRF RVLDSAGLETEATSGSILQRTSSMTANVLAKTHFAVFIIDARAGLHPLDMEVGKWLRKNAPGMIPVVVLNKAELLFDGRESFSEAADEVRMLGFGDPIAI SAETGLGMTALHEALRPLLEEHVLQVLNSNNEDDGTGLCSDSSLEEDDDSKLPLQLAIVGRPNVGKSTLLNALLQEERVLVGPEAGLTRDSVRAQFDFQG RTVDTAGWLHRTKDEKRPSSLSIMQSKKNLMRAHVIALVLDAEQIAEARRSMTHAEVVIARRAVEEGRGLVVVVNKMDLLKGKLFDKVIETVPLEIQTVI PQVTGIPVVFTSAIEGKGRIPVMRQVIETYDKWCSRLSTARLNRWIRKCLSLIEWVFYVSRSGYEQAFVERRGHATKDKVLDPGEGSSTYICCLHKWEEA DFRIGDSVPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39960			GTP binding;GTP binding (.1)		Lus10014634 [exp]	0	1
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	4.0	0.7983
AT2G03667			Asparagine synthase family pro...		Lus10004643 [exp]	5.3	0.7977
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	13.2	0.7684
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10003558 [exp]	16.9	0.7573
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	19.6	0.7540
					Lus10011199 [exp]	20.7	0.6115
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10013775 [exp]	22.2	0.7277
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	23.3	0.7558
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	23.7	0.7491
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10014490 [exp]	25.8	0.6929

Compare expression of checked genes

Lus10014634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.