Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49890 478 / 3e-163 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT3G19570 429 / 3e-144 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G30710 200 / 7e-57 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G24070 178 / 4e-49 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT5G43160 167 / 4e-48 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT2G44190 115 / 2e-27 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) AT3G60000 112 / 1e-26 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G25190 105 / 2e-24 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G20815 84 / 4e-17 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033792 [exp] 907 / 0 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10018698 [exp] 329 / 2e-105 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10022176 [exp] 199 / 3e-56 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010780 [exp] 190 / 7e-54 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010779 [exp] 190 / 3e-53 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10007759 [exp] 152 / 2e-43 AT5G43160 157 / 5e-48 QWRF domain containing 9, Family of unknown function (DUF566) (.1) Lus10038729 [exp] 140 / 5e-36 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10039129 [exp] 137 / 5e-35 AT2G44190 268 / 6e-84 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10007760 [exp] 120 / 9e-30 AT1G49890 127 / 1e-31 QWRF domain containing 2, Family of unknown function (DUF566) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295800 [exp] 585 / 0 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.009G089800 [exp] 584 / 0 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.014G017500 [exp] 362 / 4e-118 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 359 / 4e-117 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.006G181700 [exp] 233 / 3e-69 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.018G103800 [exp] 228 / 2e-67 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.006G000400 [exp] 132 / 1e-33 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.016G000300 [exp] 121 / 9e-30 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.001G126000 [exp] 105 / 2e-24 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.013G146100 [exp] 97 / 6e-21 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [flax] [poplar] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Lus10014636 pacid=23149626 polypeptide=Lus10014636 locus=Lus10014636.g ID=Lus10014636.BGIv1.0 annot-version=v1.0 ATGTCTGTTGCATCCAAGATGTTGATCACTTCCACCAGGAGCTTGTCGGTGTCGTTTCAGGGGGAAGCATTTTCGCTCCCCATAAGCAAGGCCAAGGCTG TGAGTACTGGTAGGAAATCAACTCCCGAGAGGAGGAAGGCGGCCACCCCTGTGAGAGATCAGGTTGAGAATTCGAGGCCGGCGGATCAACTGAGGTGGCC TGCAAGGAGCAGAGATGGGAATTTGAGCTCAAGGGAGAGAAATCATCATCCTTTGTTATCTTCTAGGAGTATGGATAGCATCGGCGGTGGTGGTAGAGAT AATAGGAGCAGAACAGTCGGATCTGGGTTGATGGTGGCCAAGTCTTTGCAACAGTCTATGATGTTCGATGACACTAGGAGGAGGTTGAGTTTGGATTTCG GCAGTGCTGCCAAGTTAAACCATTCAGATTCCGCCAATTTGGAAAAAGACTCTTGCTTTGTTGCAGCTGGTGATCTCACCGAATCCGATAGTGATAGTGT TTCCTCCGGGAGTACTTCAGGAATGCAAGAATTTGGTGGGATGGTTTCTAAAGCCAAAATCGGACCTCCTCGTGGAATCGTTGTGTCCTCAAGGTTTTGG CAAGAAACAAATACTAGGTTGAGAAGGCTACAGGATCCAGGCTCACCACTCTCTACCAGTCCCGGTTCAAGAATGGCTAAGGTCAGCCAGTCTAAGAGAT TTAGCAGTGATGGTCCATTAATGTCTCCTAGATCAATGACAGCTTCGCCTATAAGAGGGGCTTCAAGGCCTGCCTCGCCTGGTAAGCTATGGACGTCTTC AGCGGCTTCCTCTCCGTTGAGAGGGATGTCTAGTCCTTCAAGGGCGAGGCCGATGAGTAGTGGCAGTCCAATGAACAATCCTTCAATTCTTAGTTTCTCT GTTGATTTAAGGAGGGGGAAGATAGGGGAGGACCGAATCAATGATGCACACACGTTGAGGCTTCTGTATAATCGTTACTTGCAATGGCGATTCGTAAATG CAAGAGCGGATACCACCTTCACCGTGCAGAAGCTTAATGCAGAGAAAAACATGTGGAATGCGTGGTTGACAATATCTGAACTGCGACACTCTGTTACTCT TAAAAGGGTTAAGATGCTGCTATTAAAGCAGAAGCTGAAGTTAACTTCTATTATGAAGGGACAAATCAGATATCTTGAGGACTGGTCAGGTCTTGAGAGA GATCATTGTACTGCATTGGATGGGGCAAATGAAGCCTTGAAGGCCAGCACCCTCCGTCTTCCAGTTGTTGGAAATGCCATTGCTGATGTACAGAACCTGA AGGACGCTGTTGGCTCAGCAGTAGATATAATGCAAGCAATGGCATCTTCGATATGCTCACAATTATCCAGGGTGGACGATATGAATTCGTTGGTGGCTGA ACTTGTGAATGTAATAGCGAAGGAGAAAGTTTTCCTTGATCAATGTAGAGACTTCTCATCCACGCTAGCGGCCTTGCAGGTAAAAGACTGTAGCTTGAGG ACGCACATAATACAATTAAATCGTTTGCCAGCAACTTGA
AA sequence Show only first row Show all	>Lus10014636 pacid=23149626 polypeptide=Lus10014636 locus=Lus10014636.g ID=Lus10014636.BGIv1.0 annot-version=v1.0 MSVASKMLITSTRSLSVSFQGEAFSLPISKAKAVSTGRKSTPERRKAATPVRDQVENSRPADQLRWPARSRDGNLSSRERNHHPLLSSRSMDSIGGGGRD NRSRTVGSGLMVAKSLQQSMMFDDTRRRLSLDFGSAAKLNHSDSANLEKDSCFVAAGDLTESDSDSVSSGSTSGMQEFGGMVSKAKIGPPRGIVVSSRFW QETNTRLRRLQDPGSPLSTSPGSRMAKVSQSKRFSSDGPLMSPRSMTASPIRGASRPASPGKLWTSSAASSPLRGMSSPSRARPMSSGSPMNNPSILSFS VDLRRGKIGEDRINDAHTLRLLYNRYLQWRFVNARADTTFTVQKLNAEKNMWNAWLTISELRHSVTLKRVKMLLLKQKLKLTSIMKGQIRYLEDWSGLER DHCTALDGANEALKASTLRLPVVGNAIADVQNLKDAVGSAVDIMQAMASSICSQLSRVDDMNSLVAELVNVIAKEKVFLDQCRDFSSTLAALQVKDCSLR THIIQLNRLPAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	0	1
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	1.4	0.9348
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10011149 [exp]	1.7	0.8839
AT3G28420			Putative membrane lipoprotein ...		Lus10005837 [exp]	2.8	0.8842
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	4.9	0.8787
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	5.5	0.8617
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	6.7	0.8645
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10040638 [exp]	6.8	0.8442
AT2G46980			unknown protein		Lus10009259 [exp]	7.4	0.8590
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10040085 [exp]	7.5	0.8540
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	8.8	0.8343

Compare expression of checked genes

Lus10014636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.