Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60995 758 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033791 [exp] 1174 / 0 AT1G60995 815 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211700 [exp] 870 / 0 AT1G60995 786 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09746 [flax] [poplar] Membralin Tumour-associated protein
Representative CDS sequence Show only first row Show all	>Lus10014638 pacid=23149634 polypeptide=Lus10014638 locus=Lus10014638.g ID=Lus10014638.BGIv1.0 annot-version=v1.0 ATGGATCCAGAACAAACTTTCATAAGATTGCAAGATCGGTTTTCGCAGGTGTTGACTGCCAAATTGAGGGCAACTTTGGAGTATGTCTATTTGTTTATTG CCATCACTCTCTTCAGCATTCTTGTGGTCATGCACGCCAATTATGTTCAGCAGCCTGGATGTTCGAGTGAGCTTCCTGTTGTTGAAGCTCTGGATGCCCA ACTCATTCATATAAAGATTACTAGTGCAGGACTGTGGTTGCAGAATGAGTCAGAATATAGCATCGAAGTTGTTCCGGATTTGAATGTTGTAACAGATCAA TTTGAACGGCCAAATGTGGGTACAGATGATTTAGCGCTGTTGGCTTCAAAGTTTTGGCAGAACTGGATTGGTTTCGGTACCAGGAACGGGAAATTGACAT TGAATTTTTGGCGGACTGATAATGAACTTGTTGAACAACAGCATGACAGCTCTTCCACAGAAAGCTCTAAATCAATGTTCGATGATAGCGTTACTAAAAC TGAGAGGGAAACACGGAGCAGGTTTTCTATGTTAGTCAAGGACACGTTAAAGGTAGCTATTGCTCATGTCAACAAAAAGTGGCACAGGCGTCTATCATTC ATTTGGAGATTTGTATTGCAAATATCTCATGGTATCCAGAAGCTATGGAATATTACGGGCATTTGTTTGAATCTTGATGTTCCTAAGTGGCTAGGAATAC TTCACTTGGACAGGGCTAACTCATTTGCAGTTCAGTGGCTTGAAAAGAAAAGCAAAGGTTTTGAACCAGCCTATCTGTACACCATGGAAAAGGGCTATTT CTTGCTTCCTGAAGAGGCCAGATTGCAACATAACATATGCACAGTGAATGTAACCATATCGGCTTGGCATCCTTGTTTCGGTAACAGGTGGCAACAACTC CTGATAAATAGAGTGGTTGGCTATGATACCATATTGATGAATAGTATACTCAGCTCTCCCGGGCATGGTTACCTTTATAACTTTCAAACAAACGAGTTTT ACAATCTCAGCTATGCTCAATTACCACCTGAAGGACCTGCAAAGTTTGGAGACTATCTGGTAACCAAATGTGGTGTGCTTATGATGTCGTTGTTTGTGTT CTTTACCACAACAATGTCTGTATCATTTACACTGAGAGAAACACAGACTCGGATGTTGAAGTTTACAGTGCAGCTTCAACACCATGCTCGACATCACTTG CCAACATTTCAATTGATCTTTGTCCATGTGATTGAATCCCTTGTCTTTGTACCAATAATGATCGGAATCCTGTTTTTCCTGTTTGAGTTCTATGATGATC AGCTTTTGGCTTTCATGGTCTTGATTCTTGTTTGGTTGTGTGAACTCTTCACACTGATAAGTGTCCGCACACCTATATCAATGAAGTTCTTCCCTCGCTT CTTTTTGCTATATTTTCTGGTCTTCCACATCTATTTCTTCTCCTATACATACGGATTTTCCTATCTAGCTCTCTCTACAACTGTAGCATTCATGCAGCAC TTGATCCTATATTTTTGGAATCGCTTTGAGGTACCGGCCCTGCAGAGGTTTATGCAGAACCGAAGAACACAGCTTCAGCAACATCCCGACTTCCACATAA CCTCATCAACCATATTTGCATCAACTTTACACATTACAAGATTCAACACCAGGAACCCCCAAGGTCCCCTGAACGTCGAAATGGGGGTGAGTGGTTCCGA GCAAATGCCTGCCGTAGCAACTACGGGAACAGCAGAGCCTGCTGTGGGAAACAACAACAATAACGTGGGGGAAGCAGAGAGTGGAGCTGGTGGTGCTAAT GTAGGGTCAATGAATTCGTTCAGTTCATTGTTGTTGTGGATTCTAGGAGGGGCTTCTTACGAAGGGCTCAACACGTTTCTTTCAATGTTTAGAGACATGA GAGATCATCAGGGCCAAGTTTATGCTGATAACCAAAGTCGGGGAGGAGAGCAGACGACCGGTGAGGATGTTGATTAA
AA sequence Show only first row Show all	>Lus10014638 pacid=23149634 polypeptide=Lus10014638 locus=Lus10014638.g ID=Lus10014638.BGIv1.0 annot-version=v1.0 MDPEQTFIRLQDRFSQVLTAKLRATLEYVYLFIAITLFSILVVMHANYVQQPGCSSELPVVEALDAQLIHIKITSAGLWLQNESEYSIEVVPDLNVVTDQ FERPNVGTDDLALLASKFWQNWIGFGTRNGKLTLNFWRTDNELVEQQHDSSSTESSKSMFDDSVTKTERETRSRFSMLVKDTLKVAIAHVNKKWHRRLSF IWRFVLQISHGIQKLWNITGICLNLDVPKWLGILHLDRANSFAVQWLEKKSKGFEPAYLYTMEKGYFLLPEEARLQHNICTVNVTISAWHPCFGNRWQQL LINRVVGYDTILMNSILSSPGHGYLYNFQTNEFYNLSYAQLPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQLQHHARHHL PTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFMVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYTYGFSYLALSTTVAFMQH LILYFWNRFEVPALQRFMQNRRTQLQQHPDFHITSSTIFASTLHITRFNTRNPQGPLNVEMGVSGSEQMPAVATTGTAEPAVGNNNNNVGEAESGAGGAN VGSMNSFSSLLLWILGGASYEGLNTFLSMFRDMRDHQGQVYADNQSRGGEQTTGEDVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60995			unknown protein		Lus10014638 [exp]	0	1
AT4G02715			unknown protein		Lus10006911 [exp]	2.2	0.9227
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	2.4	0.9239
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	3.5	0.9350
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10008294 [exp]	3.7	0.9217
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	4.2	0.9173
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10034601 [exp]	4.9	0.9182
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	5.8	0.9111
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	6.8	0.9241
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Lus10040529 [exp]	7.2	0.9048
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000833 [exp]	7.4	0.9160

Compare expression of checked genes

Lus10014638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.