Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39210 689 / 0 Major facilitator superfamily protein (.1) AT2G28120 645 / 0 Major facilitator superfamily protein (.1) AT1G74780 333 / 2e-107 Nodulin-like / Major Facilitator Superfamily protein (.1) AT1G18940 316 / 6e-101 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34355 315 / 2e-100 Major facilitator superfamily protein (.1) AT5G14120 308 / 4e-97 Major facilitator superfamily protein (.1) AT5G50520 297 / 1e-93 Major facilitator superfamily protein (.1) AT5G50630 297 / 1e-93 Major facilitator superfamily protein (.1) AT3G01930 293 / 1e-91 Major facilitator superfamily protein (.1.2) AT4G34950 286 / 7e-89 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033790 [exp] 1045 / 0 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 707 / 0 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 704 / 0 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 680 / 0 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10022614 [exp] 615 / 0 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10021513 [exp] 573 / 0 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1) Lus10042170 [exp] 332 / 6e-107 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10025123 [exp] 306 / 1e-96 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1) Lus10033115 [exp] 297 / 2e-93 AT1G74780 619 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122400 [exp] 755 / 0 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 685 / 0 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.002G133900 [exp] 672 / 0 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 622 / 0 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 600 / 0 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 310 / 6e-98 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 306 / 2e-96 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G194500 [exp] 281 / 9e-92 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1) Potri.015G067000 [exp] 293 / 1e-91 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.004G173400 [exp] 292 / 2e-91 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10014640 pacid=23149616 polypeptide=Lus10014640 locus=Lus10014640.g ID=Lus10014640.BGIv1.0 annot-version=v1.0 ATGGTAGCCGACCACCCAACCGCCGGTGGAGGATGGAAGTCGACAAAGAACTTCGCCGTCCAGGTCCTATTCGGCCAGTGGTTCATGGTCTTCGCTTCCC TTCTCATCATGTCCGTCTCCGGCGCAACCTACATGTTCGGTCTATACTCCCCTGACATCAAGACCTCCTTAGGCTACGACCAAACCACCCTCAACCTCCT CAGCTTCTTCAAGGACTTAGGCGGCAACGTCGGCATAATCTCCGGCCTAATCAACGAAGTCGCCCCTCCCTGGGTCGTCCTCGTCATCGGCGCCGTCATG AATTTCTCCGGCTACTTCATGATCTGGCTCGCCGTCACCTACCGAATCCCCAAACCGAAGCTGTGGCAGATGTGCCTCTACATTTGCGCCGGCGCCAATT CCCAGTCCTTCGCCAACACCGGCGCTCTCGTCACCTGCGTCAAGAACTTCCCCGAATCCAGAGGCTCTGTTTTGGGGCTTCTCAAAGGATTCGTAGGACT CAGCGGCGCAATTCTCACTCAAATTTACCACGCCTTGTACGGAGACCAAAATCCTAAGGCTTTAATCCTTCTAATTGGTTGGCTCCCCACCGCCGTCTCC TTCCTCTTCCTCCGAACCATTCGAATCATCAAAACCGCCGCCAGTTACCAAGCTGATAAACAGCTCGGCGTCTTCTACAGAATGCTCTACATTTCCCTCG CCCTTGCCGGTTCCCTTATGATTCTAATCATCGTTCAGAACCAATTTCGATTCGACAGAGTCGAGTTCATCTCCGGCGCCTCCGCGGTTCTATTACTCCT CTTCCTTCCACTCGCGGTGGTAATTAAGGAGGAATTCGACTTCTGGCGCACTCCCATTGACGAATCGGACCCTCCTCCCGAGGTCACAATCGTCGCCGCC GTAGCAGAAACAGAAACCCCCTCCGCATCTGCTCCACCGTCTCTGAGGTGCACAGAGAACGTGTTCAGCCCGCCGAACAGAGGCGAAGACTACACTATCC TCCAAGCGCTGTTCAGCGTGGACATGGCAATCATATTTGTGGCGACGGCGTGCGGCGTCGGAGGGACGCTGACGGCAATCGACAATTTAGGTCAAATCGG TGACTCGCTCGGGTACCCGAGACAGAGCACCACAACCTTCATCTCCCTCGTAAGCATATGGAACTACCTTGGCAGAGTAGTCTCCGGCTTCGCATCGGAA TACCTGCTGAAAAAGTACAAAATCCCCAGGCCTTTGCTCTTCACAATCGTCCTCCTCTCAGCCTGCGTCGGCCATCTGTTGATCGCGTTCGCCGTGCCGA ACTCGCTGTACGTGGCCTCCGTAGTGATCGGGTTTTGCTTCGGAGCGCAGTGGCCGTTGGTGTTCGCCATTATATCGGAGATCTTCGGGCTGAAGTACTA CTCGACGCTGTACAATCTGGGCGGGTTTGCAAGTCCGGTGGGGTCGTATATTCTGAACGTGAGAGTGGCCGGTTATTTGTACGACAGGGAGGCGAGGAAG CAAATGGCGGGTTCGGGTCGGATGAGGGAAGCGGGTCAGTCCTTGCGTTGCGCTGGGGCCAGCTGTTACAGAATGGCTTTCCTGATAATTACTGCGGTAA CTATATTTGGCACGGTTGTTTCGACGGTTCTGGTGGTTCGGACAAGGAGTTTTTACCGTGGGGATATTTACAAGAAGTTTAGAGACAAGGGAATAGAAGT CGTTGGTGTCAGTGATAATAATGGCCGAAAAGGTGAGTCTTCTTCAAAAGCAGGAAGAGAGTTCTGA
AA sequence Show only first row Show all	>Lus10014640 pacid=23149616 polypeptide=Lus10014640 locus=Lus10014640.g ID=Lus10014640.BGIv1.0 annot-version=v1.0 MVADHPTAGGGWKSTKNFAVQVLFGQWFMVFASLLIMSVSGATYMFGLYSPDIKTSLGYDQTTLNLLSFFKDLGGNVGIISGLINEVAPPWVVLVIGAVM NFSGYFMIWLAVTYRIPKPKLWQMCLYICAGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQIYHALYGDQNPKALILLIGWLPTAVS FLFLRTIRIIKTAASYQADKQLGVFYRMLYISLALAGSLMILIIVQNQFRFDRVEFISGASAVLLLLFLPLAVVIKEEFDFWRTPIDESDPPPEVTIVAA VAETETPSASAPPSLRCTENVFSPPNRGEDYTILQALFSVDMAIIFVATACGVGGTLTAIDNLGQIGDSLGYPRQSTTTFISLVSIWNYLGRVVSGFASE YLLKKYKIPRPLLFTIVLLSACVGHLLIAFAVPNSLYVASVVIGFCFGAQWPLVFAIISEIFGLKYYSTLYNLGGFASPVGSYILNVRVAGYLYDREARK QMAGSGRMREAGQSLRCAGASCYRMAFLIITAVTIFGTVVSTVLVVRTRSFYRGDIYKKFRDKGIEVVGVSDNNGRKGESSSKAGREF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39210			Major facilitator superfamily ...		Lus10014640 [exp]	0	1
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10001347 [exp]	4.5	0.8155
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	9.8	0.8108
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	9.9	0.7970
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10020408 [exp]	10.2	0.8093
AT3G11110			RING/U-box superfamily protein...		Lus10040942 [exp]	15.7	0.7356
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10022903 [exp]	20.5	0.7983
AT1G25250	C2H2ZnF	ATIDD16	indeterminate(ID)-domain 16 (....		Lus10031314 [exp]	20.8	0.7680
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10018662 [exp]	22.8	0.7490
					Lus10023424 [exp]	23.1	0.7734
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	24.0	0.7933

Compare expression of checked genes

Lus10014640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.