Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14750 363 / 2e-127 APK1, ATAKN1, APK ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) AT3G03900 321 / 1e-111 APK3 adenosine-5'-phosphosulfate (APS) kinase 3 (.1) AT4G39940 318 / 6e-109 APK2, AKN2 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 2, APS-kinase 2 (.1) AT5G67520 298 / 5e-101 APK4 adenosine-5'-phosphosulfate (APS) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033788 [exp] 538 / 0 AT2G14750 355 / 7e-124 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G088100 [exp] 391 / 3e-138 AT2G14750 367 / 8e-129 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) Potri.001G293400 [exp] 389 / 2e-137 AT2G14750 365 / 6e-128 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) Potri.013G057900 [exp] 312 / 5e-108 AT3G03900 355 / 2e-126 adenosine-5'-phosphosulfate (APS) kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01583 [flax] [poplar] APS_kinase Adenylylsulphate kinase
Representative CDS sequence Show only first row Show all	>Lus10014641 pacid=23149621 polypeptide=Lus10014641 locus=Lus10014641.g ID=Lus10014641.BGIv1.0 annot-version=v1.0 ATGAATGCCGCGGCTGGAGTAAAGCCGCTGCCGGGAATCGCAACTCCGAAACCCTTATTCACGAGCTTTGGAGACGCCTCGATTAGTTTGAATCCCACGA AGAAGATCGGCGCCAGGTGTCTCAGAATCAAAGCTATGGACGAATCGGCGGCGATGAGAATCAACCAGACTGCCAAGGTTGATGACGATGGTGTCGTTGC AAAGGATCCGGCGTTGGTCAATGGGCACGCCGGAAACGAGAGCAGCTCATTATCAACAGTTGGGAACTCGACTAATATAAAGTGGCACGATTGCTCTGTC GACAAAATTGCTAGGCATACGTTACTCAATCAAAAAGGTTCTGTCATATGGATCACGGGTCTCAGCGGTTCAGGAAAGAGCACTGTGGCTTGTGCTTTGA GTAAAATCTTGTACCAAAGAGGGAAGCTGACCTATATTCTTGATGGAGATAATGTAAGACATGGTCTAAACCGTGATCTTAGTTTTAAGGCAGAAGATCG TGCAGAGAACATCCGCCGAGTTGGGGAGGTGGCTAAATTGTTTGCTGATTCTGGTGTAATCTGCATAGCATGCCTGATTTCTCCCTACAGAAGGGACCGG GATTCCTGTCGTGCTATGTTGCCAACTGGAGATTTTATTGAGGTATTCATGGATGTCCCACTACAAGTTTGTGAAGCCAGAGATCCTAAGGGCTTATATA AACTTGCCCGTGCTGGGAAGATCAAAGGCTTTACTGGTATTGATGATCCGTATGAGGCACCGACTGATTGTGAGATTGTACTGGAATGCAAGACAGGTGA CTGTGCTTCACCTATGGACATGGCCGAGAAAGTTGCTTGTTTCTTGGAGGAGAAGGGGTACCTCCAAGCATGA
AA sequence Show only first row Show all	>Lus10014641 pacid=23149621 polypeptide=Lus10014641 locus=Lus10014641.g ID=Lus10014641.BGIv1.0 annot-version=v1.0 MNAAAGVKPLPGIATPKPLFTSFGDASISLNPTKKIGARCLRIKAMDESAAMRINQTAKVDDDGVVAKDPALVNGHAGNESSSLSTVGNSTNIKWHDCSV DKIARHTLLNQKGSVIWITGLSGSGKSTVACALSKILYQRGKLTYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADSGVICIACLISPYRRDR DSCRAMLPTGDFIEVFMDVPLQVCEARDPKGLYKLARAGKIKGFTGIDDPYEAPTDCEIVLECKTGDCASPMDMAEKVACFLEEKGYLQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10014641 [exp]	0	1
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10042430 [exp]	13.6	0.8566
AT1G63420			Arabidopsis thaliana protein o...		Lus10027473 [exp]	14.2	0.7691
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10013462 [exp]	16.9	0.8602
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Lus10009915 [exp]	19.4	0.7983
AT1G56423			unknown protein		Lus10031415 [exp]	25.6	0.8372
					Lus10018472 [exp]	25.8	0.8432
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10015942 [exp]	30.2	0.8340
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10017865 [exp]	30.3	0.8073
AT3G11810			unknown protein		Lus10036797 [exp]	31.7	0.8277
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	33.6	0.8416

Compare expression of checked genes

Lus10014641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.