Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33840 662 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33860 649 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33830 622 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33810 434 / 7e-147 Glycosyl hydrolase superfamily protein (.1) AT4G33820 419 / 2e-140 Glycosyl hydrolase superfamily protein (.1) AT4G38650 408 / 3e-136 Glycosyl hydrolase family 10 protein (.1) AT2G14690 394 / 8e-131 Glycosyl hydrolase superfamily protein (.1) AT4G38300 234 / 1e-72 glycosyl hydrolase family 10 protein (.1) AT1G58370 199 / 2e-54 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT1G10050 195 / 6e-53 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033786 [exp] 1116 / 0 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 727 / 0 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033784 [exp] 463 / 7e-154 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10025054 [exp] 396 / 8e-132 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014646 [exp] 330 / 3e-107 AT4G33820 336 / 6e-110 Glycosyl hydrolase superfamily protein (.1) Lus10034490 [exp] 323 / 9e-104 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033787 [exp] 280 / 3e-91 AT4G33860 266 / 2e-86 Glycosyl hydrolase family 10 protein (.1) Lus10037528 [exp] 212 / 2e-58 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007243 [exp] 202 / 3e-55 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087900 [exp] 677 / 0 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 543 / 0 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 516 / 3e-178 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 475 / 1e-162 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.004G173300 [exp] 401 / 1e-133 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.002G113066 [exp] 232 / 3e-67 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113132 [exp] 204 / 2e-56 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF02018 [flax] [poplar] CBM_4_9 Carbohydrate binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10014642 pacid=23149619 polypeptide=Lus10014642 locus=Lus10014642.g ID=Lus10014642.BGIv1.0 annot-version=v1.0 ATGCATCTGCTGCTGATTTTCTGTTCTCTTCTTTCTTCAGTCCGTGGATTGCCTTACGACTATACAGCTAGCATCGAGTGCCTGGAAGTGCCCAACAAAG CTCAGTATGGGGGAGGAATCATAGTCAACCCCGACATGAATAATGGGATGACAGGTTGGACTAGATTTGGGAACCCTACCCTTGAAAACAGAACTGCTGC ATCCAACATCAACACCTTCGTTGTGGCTCACAGCAGAAGTGCACATTTCGACAGTGTCTCCCAAACTGTTTACTTACATAGCCATCTCCTTTACACCTTT TCTGCTTGGGTACAGGTAAACCAAGGGAACGTCCACGTCACGGCGACATTCAAGACCTCTGACGGGTCGTTCCTACGAGCCGGAGGAGCGGTGGCCGAAT CAGGATGTTGGTCAATGCTTAAAGGTGGACTAACTGTCAACACCTCCGGCCAGGCCAACCTCTACTTCCACACCCATAATTCCACCGCCGACATTTGGAT CGACAGCGTCTCTTTACAACCATTCACTCAACAAGAATGGACCTCCCATCACCATCAAACTATCCAACAAATCCGGAAGAGGAAAGTCAGGATCCAGACA GTGAACAAACAGGGGACTCCCTTGCGAAACGCAAAAGTCTCAATCAACCGAAAATCGTCCAGGTTCCAGCTAGGATGCGCAATGAACAAGAACATCCTCA CCAACCAAGCCTATAAAAAATGGTTCACGTCAAGAAGGTTTGGCGTCACCACTTTCGAAGATGAAATGAAATGGTACAGCACGGAGCAATCCAGAGGACA CGAGGATTACTCTGCAGCCGATTCCATGCTCAAATTCGCAAAGATGCATAACATTGCGGTCCGCGGCCACAACGTTCTGTGGGACGATCCGCATTACCAG CCAGGATGGTTGACTTCACTATCCGGACCGGAATTTGCCGCGGCGGTCAACAGGAGGATAAACTCTGTGGTGTCTAGATACAAAGGGCAGCTTATTTCGT GGGATGTGGTCAACGAGGATGTCCATTTCTCCTTCTTCGAGAGCAAACTTGGGGCCCAAGCTTCCGGAAACGCGTACCGTATGGCACACCGGGTGGATCC CGATACGCCGCTGTTCATAAACGATTTCAATACGATTGAAGAGAGTCGAGACGGGGTGTCAGTGCCTGGAAAGTATTTACAGAAGCTGAGAGAGGTAAGT AGGTTTTCTGATAACGTGAGGATCAAGTTTGGGATTGGCTTGGAGGCTCATTTCGGGGGGACTCCGAACATTCCTTACATGAGATCTTCGATAGACACGC TTGCGGCTGCTGGAATTCCGATTTGGCTTACGGAGGTGGACGTTAAATCGTGCCCCGATCAGGCCGGTTACTTGGAGCAAGTGCTGAGGGAAGGGCACGG TCATCCTAAAGTCGACGGGATGGTTCTTTGGGCGGCGTGGAAGCCGCAAGGTTGTTACAGGATGTGTTTGACTGACAACGAGTTTAGAAACTTGCCTACG GGAGACGTGGTGGACAAGCTACTGGGAGAGTGGGGTGGACATGGTTACTTGGGGGAGACGGATGAGGATGGTTACTTGGAGACTTCTCTTTTTCATGGAG AGTACGAGGTTGTAATAAGTCATCCCGATTTGTTTGGGAACTCTACTACTACCATGGCTAAAGGGCTCTCTGTAGCTCCTACTCATGTTGATGATGATGA TGATGGAACTGGGAACCCTTTGATTCTTCAAATGGTGGCTTAA
AA sequence Show only first row Show all	>Lus10014642 pacid=23149619 polypeptide=Lus10014642 locus=Lus10014642.g ID=Lus10014642.BGIv1.0 annot-version=v1.0 MHLLLIFCSLLSSVRGLPYDYTASIECLEVPNKAQYGGGIIVNPDMNNGMTGWTRFGNPTLENRTAASNINTFVVAHSRSAHFDSVSQTVYLHSHLLYTF SAWVQVNQGNVHVTATFKTSDGSFLRAGGAVAESGCWSMLKGGLTVNTSGQANLYFHTHNSTADIWIDSVSLQPFTQQEWTSHHHQTIQQIRKRKVRIQT VNKQGTPLRNAKVSINRKSSRFQLGCAMNKNILTNQAYKKWFTSRRFGVTTFEDEMKWYSTEQSRGHEDYSAADSMLKFAKMHNIAVRGHNVLWDDPHYQ PGWLTSLSGPEFAAAVNRRINSVVSRYKGQLISWDVVNEDVHFSFFESKLGAQASGNAYRMAHRVDPDTPLFINDFNTIEESRDGVSVPGKYLQKLREVS RFSDNVRIKFGIGLEAHFGGTPNIPYMRSSIDTLAAAGIPIWLTEVDVKSCPDQAGYLEQVLREGHGHPKVDGMVLWAAWKPQGCYRMCLTDNEFRNLPT GDVVDKLLGEWGGHGYLGETDEDGYLETSLFHGEYEVVISHPDLFGNSTTTMAKGLSVAPTHVDDDDDGTGNPLILQMVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10014642 [exp]	0	1
AT4G35150			O-methyltransferase family pro...		Lus10006691 [exp]	1.0	0.9421
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	3.2	0.9050
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	3.2	0.9138
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	4.0	0.9087
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035190 [exp]	4.7	0.8757
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Lus10021902 [exp]	5.3	0.8964
					Lus10018215 [exp]	5.5	0.9016
AT5G05180			unknown protein		Lus10034251 [exp]	6.2	0.9088
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10022316 [exp]	8.2	0.8669
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	9.0	0.8788

Compare expression of checked genes

Lus10014642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.