Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33820 336 / 9e-110 Glycosyl hydrolase superfamily protein (.1) AT4G33840 333 / 9e-109 Glycosyl hydrolase family 10 protein (.1) AT4G33860 330 / 2e-107 Glycosyl hydrolase family 10 protein (.1) AT4G33810 322 / 9e-105 Glycosyl hydrolase superfamily protein (.1) AT4G33830 323 / 1e-104 Glycosyl hydrolase family 10 protein (.1) AT2G14690 303 / 2e-97 Glycosyl hydrolase superfamily protein (.1) AT4G38650 265 / 9e-83 Glycosyl hydrolase family 10 protein (.1) AT4G38300 181 / 8e-54 glycosyl hydrolase family 10 protein (.1) AT1G10050 147 / 6e-38 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT1G58370 146 / 1e-37 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033784 [exp] 697 / 0 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10014642 [exp] 329 / 4e-107 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033786 [exp] 320 / 9e-104 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 318 / 8e-103 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10025054 [exp] 267 / 1e-83 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10034490 [exp] 254 / 7e-79 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033787 [exp] 180 / 3e-54 AT4G33860 266 / 2e-86 Glycosyl hydrolase family 10 protein (.1) Lus10028243 [exp] 152 / 2e-39 AT1G58370 1278 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007243 [exp] 151 / 4e-39 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087800 [exp] 404 / 4e-136 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 388 / 5e-130 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 372 / 2e-124 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.009G087900 [exp] 333 / 6e-109 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.004G173300 [exp] 270 / 2e-84 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.002G113132 [exp] 151 / 3e-39 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113066 [exp] 133 / 3e-33 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10014646 pacid=23149644 polypeptide=Lus10014646 locus=Lus10014646.g ID=Lus10014646.BGIv1.0 annot-version=v1.0 ATGAAAAGGGAAGGAGCTTTCCTGTTCATTCTTTTCTGCATGTTTCTCCATTCTGAGGGACTGCCCTATGATTATTCTGCAACAACTGATGCAAGACAAG CATTTCAATATTTCTTATTTTCCCAATGCTCTGTCTGGGATCTCGAAGTCTTCACCTTTGTTTATTCTATATTGCAGTGCTTGGCTGCACGAGGTAGACC CCTCTATGATGGAGGAATCATGGATAACACCACACATTGGGTTGCAAACAGGACATGGGAGGTTTATCTGGATAAGCGAAACCTGTATGAATTCTCCGCT TGGCTTCAGATTAACAAAGGAAGTGGGATCGTCGTGGATGCTGTTTTCAGAAGATCTACTGGTGAAGTGCACAATGTCGGCAGAGCTATTGCTAGAGAGG GATGTTGGTCTATGCTCAAAGGTGGTTTCTCTCCAAATTTTTCAGGCTATGTTGAGATTTTGTTCCAGAGTGAGGAAGACCCAACAGCTGAAATCCGGGC TGAACGTATCTCGTTGCAACCATTCACCGTCCAGCAATGGAGATCTCATCAGGATCAAAGCATTGAGAAGATAAGAAAGAGCAATGTGAGATTCCGCATT ACAGATCCAAACGGGAAACCATTGCCAAATGCTGTGGTAACCTTCAATCAAACAACCACAAGCTTTCCCTTTGGATACGGAATGAATGCCTACATCCTCA ACTGCTCATCCTACCAGCAATGGTTCGCTTCGAGATTCAAGTACACGACTTTCACAAACGCGATGAAGTGGTACAGCACCGAGGTGATCCAAGGCCAAGA GAACTACACCACACCGGACGCCATGCTGCAGTTCTGCAAGCAAAATGGCATTTCCATCAGAGGCCACAACATATTATGGGACAACCCCAAGGAGCAACCT GAGTGGGTCAAGAACCTTACCGGGAACAAACTACGAGAAGCTGCAGAAGAGAGGATAGAATCAGTAGTGTCAAGGTACAAAGTGGAACTCATTGCATGGG ATGTGGTGAATGAGAATCTTCATTTCAGCTTCTTTGAGGACAGACTTGGGAAAGATGCGTCAGCACACTTCTTTAGGGAAGCTCCCATGATCGATCCGGA TGTTAGATTGTTCATGAACGAGTACAACACGGTCGAAAATAACCGTGACAAGACCGCACATCCTGTCAATTACCTGAAGAGATTTGAAGAAATTCTTGCA TATCCTGGGAATGCAAGGATCCCTGCAGGAATCAGCTTGCAGACTAGTAGTTTCGGTTATGGGAAACTACTAGTCTGCAAACCGATTGTGGCTCACTGGG ATTGCCCTTGTGGCTCACTGAAGTATCTGTGCACCAGGGACCGAATCAAGGAGAGTACTTGGAGCAGGTCCTGA
AA sequence Show only first row Show all	>Lus10014646 pacid=23149644 polypeptide=Lus10014646 locus=Lus10014646.g ID=Lus10014646.BGIv1.0 annot-version=v1.0 MKREGAFLFILFCMFLHSEGLPYDYSATTDARQAFQYFLFSQCSVWDLEVFTFVYSILQCLAARGRPLYDGGIMDNTTHWVANRTWEVYLDKRNLYEFSA WLQINKGSGIVVDAVFRRSTGEVHNVGRAIAREGCWSMLKGGFSPNFSGYVEILFQSEEDPTAEIRAERISLQPFTVQQWRSHQDQSIEKIRKSNVRFRI TDPNGKPLPNAVVTFNQTTTSFPFGYGMNAYILNCSSYQQWFASRFKYTTFTNAMKWYSTEVIQGQENYTTPDAMLQFCKQNGISIRGHNILWDNPKEQP EWVKNLTGNKLREAAEERIESVVSRYKVELIAWDVVNENLHFSFFEDRLGKDASAHFFREAPMIDPDVRLFMNEYNTVENNRDKTAHPVNYLKRFEEILA YPGNARIPAGISLQTSSFGYGKLLVCKPIVAHWDCPCGSLKYLCTRDRIKESTWSRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33820			Glycosyl hydrolase superfamily...		Lus10014646 [exp]	0	1
AT4G33820			Glycosyl hydrolase superfamily...		Lus10014647 [exp]	6.7	0.8357
AT3G19990			unknown protein		Lus10038848 [exp]	21.1	0.8697
AT1G21890			nodulin MtN21 /EamA-like trans...		Lus10021201 [exp]	22.7	0.8636
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10000582 [exp]	23.4	0.8692
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	41.7	0.8553
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	61.9	0.8291
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003902 [exp]	65.0	0.8518
AT5G01750			Protein of unknown function (D...		Lus10022754 [exp]	68.4	0.8233
AT5G47530			Auxin-responsive family protei...		Lus10017564 [exp]	72.5	0.8315
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042481 [exp]	80.0	0.8082

Compare expression of checked genes

Lus10014646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.