Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 441 / 4e-146 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 402 / 9e-131 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 341 / 3e-107 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 322 / 4e-100 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 319 / 1e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 310 / 2e-95 RLK receptor lectin kinase (.1) AT3G53810 310 / 2e-95 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 306 / 4e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 294 / 7e-89 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3) AT4G29050 290 / 5e-88 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033783 [exp] 1286 / 0 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 496 / 8e-167 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 472 / 4e-155 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 442 / 2e-146 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 440 / 4e-145 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 439 / 3e-144 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033782 [exp] 447 / 6e-144 AT5G10530 351 / 2e-108 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 396 / 6e-129 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 393 / 3e-127 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 530 / 8e-180 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 530 / 8e-180 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 527 / 1e-178 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 526 / 3e-178 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 524 / 2e-177 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 522 / 2e-177 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 522 / 4e-177 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 513 / 1e-174 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 513 / 1e-174 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 491 / 7e-165 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10014648 pacid=23149633 polypeptide=Lus10014648 locus=Lus10014648.g ID=Lus10014648.BGIv1.0 annot-version=v1.0 ATGGATTCATTCATCTCATTCTCCCTTTTCCTCTTAATCTCCTTCTTCTTCTTTACTAAATCCAACTCCCAACAACAACAACCAGCGGCGGCTTCACTCT CCTTCAACTTCACCACCTTCCCCGCCGCCACCTGCACTTCCGACATCCGACTCTCCGGCAACGCCACCTGCCTCGACTCCTCCCTCATCATCACCGACAA CGGCACCTGGAGCACCGGCCATGCCGTCTACTCCCGTCCATTCACCCTCTGGACCAACTCCTCCTCCGCCTTGCTCGTCGCCGACTTCACCACCGACTTC GTCTTCTCCATCGACGCTGGCCGCAACGACTCCCACGGCGACGGCCTCGCCTTCTACCTCTCCAACCTCGACTACCAGATTCCCTCCGGCCGCACCGGCG GCGCCATGGGCCTTGCCTTGAACAACATGTCCCTCGATTCTTCCTCCAACCCCTTCGTCGCCGTCGAATTCGACACCTTCGCTAACGAGTGGGACGTCCC CCACGAGGAACACGTCGGCGTCGATGTCAACTCCGCCATCTCCAAAAAAACAGCCGCATGGAACGGCAGCCTCTTGGACGGAAGGAGATTGGACGCCAGG ATCACTTACAATTCCGTCGCCAGAAGCCTCTGCGTCTATTACCCTGGATTCTCAAACAATCAGCTTGTCGTTTCTCGCCAGGAGCTCTGCCATGACCTGG ATCTCACAGAGCACTTGAACGAGTCGGTAAACGTTGGGTTCTCGGCGTCGACGGGGGAAGCCACGGAGTTCCACAGAGTTCACTCTTGGTCCTTCAGCTC AAACTTGGTGGTTAGGCCAGTACCTCTTCAGCCTACGGGTAGCACACCAGGTGGTCGAGGAAAAGACTACACGGCAGGAATAGCCATTGGAGTAGCGGTT GGAACCGGTTCTTGCTTCGCAATCTTGCTGCTCGGCGGGCTTGGATTGTTCCTGTTCTGGAGGAGGAATAAGAACAACCGATCGGGAAACGAGTTCGTGA GAGTGAATGGAGCTAGGAACATTCCCAGGGAGGCTCTTGATCGTGCCACAAACAACTTCAGCGAGGATGAGAAGCTCGGGGAAGGAGGATTCGGAGCGGT TTTCAGAGGCTACGTGGATGATCTCAACATGTTCGTCGCCGTCAAGAGAATTCTCAGAGGAGCAGCACAAGGTGTTCAAGAGTACGCTAACGAGATCATG ATCATTAGCCAACTCAGGCACAAGAACTTGGTGCAGCTAATCGGCTGGTGTCACGAGAAACGCGAACTTCTGCTTGTGTACGAGTACATGGAGAATCGCA GCTTGGATTTCCACATCTTTGACGAAGAGAATTACCTGGATTGGATCAATAGGTACAAAGTTGCCCAAGGATTAGCATCCGCTTTGCATTACCTCCATGA AGAGTGCAACCAATGTGTGCTCCACAGAGACATCAAGGCCAACAACGTGATGCTGGACGCTGATTTCAACCCGAAACTCGGAGATTTCGGTCTGGCTAGG CTGGTCGATCACGATGCCGCTTCCCAAACTTTGCTCGGGGGAACTCGAGGCTACATGGCTCCGGAATGCCTCGAGAGGGGGAAGACGAGTAAGGAATCCG ACGTCTATGGGTTCGGTGTGGTTGCGTTGGAGATCGCCACAGGGAGGAGGCCATTCATTGAGATCGAAATCGAAAACGACTCAGAAGGCGATATGGTGCA TATCGCCAGGTGGGTTTGGGTGCTTTATGGAAGAGGACGGATTCTGGATGCAGTTGATAGGAAACTAAGAGGGAAGTTCAATGAGGAACAAGCAGAGCGT TTGATGATTGTGGGGCTATGGTGCTGTCATCCAAGTCCTCGACTCCGTCCTTCCATAAGAATGGCGATGGAGATGTTGAATTTCAGTTCTCCATTACGGA ATCTGCCTTTGAAGTTTCCAGGGTCCGTACATTCTACGCCTTCCAAACTATTCTCATCTTTCTCTTTATCTACTGTCAACAGTACAATCCGTGAAGAAGC TTTCAGGGGTGGAGCAGGAAGCAGCACAGATGATAGTAGTTCAAAAGATGGCTTGCTGATGATGACTGACCCGAAATCAAAATCGAAACCCCAGTCTTCG ACAGACCCTTTCGTTCGACATAGCAAAGGTGGCCGCAGCTCTGCAGCATTCCCTCGGAATCCCCACCCCTCGTTTTTCGACAGTGTGTAA
AA sequence Show only first row Show all	>Lus10014648 pacid=23149633 polypeptide=Lus10014648 locus=Lus10014648.g ID=Lus10014648.BGIv1.0 annot-version=v1.0 MDSFISFSLFLLISFFFFTKSNSQQQQPAAASLSFNFTTFPAATCTSDIRLSGNATCLDSSLIITDNGTWSTGHAVYSRPFTLWTNSSSALLVADFTTDF VFSIDAGRNDSHGDGLAFYLSNLDYQIPSGRTGGAMGLALNNMSLDSSSNPFVAVEFDTFANEWDVPHEEHVGVDVNSAISKKTAAWNGSLLDGRRLDAR ITYNSVARSLCVYYPGFSNNQLVVSRQELCHDLDLTEHLNESVNVGFSASTGEATEFHRVHSWSFSSNLVVRPVPLQPTGSTPGGRGKDYTAGIAIGVAV GTGSCFAILLLGGLGLFLFWRRNKNNRSGNEFVRVNGARNIPREALDRATNNFSEDEKLGEGGFGAVFRGYVDDLNMFVAVKRILRGAAQGVQEYANEIM IISQLRHKNLVQLIGWCHEKRELLLVYEYMENRSLDFHIFDEENYLDWINRYKVAQGLASALHYLHEECNQCVLHRDIKANNVMLDADFNPKLGDFGLAR LVDHDAASQTLLGGTRGYMAPECLERGKTSKESDVYGFGVVALEIATGRRPFIEIEIENDSEGDMVHIARWVWVLYGRGRILDAVDRKLRGKFNEEQAER LMIVGLWCCHPSPRLRPSIRMAMEMLNFSSPLRNLPLKFPGSVHSTPSKLFSSFSLSTVNSTIREEAFRGGAGSSTDDSSSKDGLLMMTDPKSKSKPQSS TDPFVRHSKGGRSSAAFPRNPHPSFFDSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10014648 [exp]	0	1
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10041290 [exp]	1.7	0.7989
AT5G10530			Concanavalin A-like lectin pro...		Lus10033783 [exp]	5.3	0.8315
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010821 [exp]	6.3	0.7667
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010866 [exp]	6.6	0.8257
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10003234 [exp]	8.9	0.7867
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006092 [exp]	11.5	0.7326
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	11.7	0.7860
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	11.7	0.7761
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	13.4	0.7434
AT5G41020	MYB		myb family transcription facto...		Lus10022926 [exp]	13.9	0.7621

Compare expression of checked genes

Lus10014648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.