Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 68 / 3e-12 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 66 / 9e-12 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 62 / 3e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 59 / 2e-09 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 56 / 2e-08 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 55 / 5e-08 RLK receptor lectin kinase (.1) AT3G55550 54 / 1e-07 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 52 / 3e-07 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 52 / 3e-07 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 51 / 9e-07 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033779 [exp] 465 / 4e-165 AT5G10530 97 / 7e-22 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033778 [exp] 462 / 5e-164 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014652 [exp] 383 / 1e-132 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033776 [exp] 378 / 5e-131 AT2G37710 91 / 8e-20 receptor lectin kinase (.1) Lus10014651 [exp] 377 / 5e-130 AT2G37710 96 / 3e-21 receptor lectin kinase (.1) Lus10033781 [exp] 294 / 5e-99 AT5G10530 99 / 4e-23 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033782 [exp] 297 / 2e-92 AT5G10530 351 / 2e-108 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033777 [exp] 157 / 1e-47 AT4G02410 49 / 9e-08 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014650 [exp] 138 / 2e-39 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 110 / 2e-26 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 110 / 2e-26 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 106 / 7e-25 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 100 / 6e-23 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 100 / 7e-23 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 99 / 2e-22 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 97 / 8e-22 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 91 / 5e-20 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 90 / 1e-19 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 89 / 3e-19 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10014649 pacid=23149642 polypeptide=Lus10014649 locus=Lus10014649.g ID=Lus10014649.BGIv1.0 annot-version=v1.0 ATGGATGTCGGAACAAGCATGATCAGCATCATCACCGTTTTCATATGGTCCCTCTTCATCTCAGTAGGCGAAACGGCGCCCTTGTCCTTCAACTACACCA ACTTTGACAAATGCAGCGACTCTCTCGAGTTCTTTGAAACCGCAGCTTGCGGGGATTCAGGGCTCGAACTCACCAACTCCGACTACTACGTAACCGGGCA AGTCCATTACTCCAAACCAATGCGCCTATGGGACGCCTCCACTGGCAACCTTACCACTTTCAACACCACATTCTCCTTCTCAATGGACAACTTCAACGGC AGCTATACCTGTGACGGCATAGCCTTCTTCATCGCCTCCATCAATTACACCATGCCCTCCATTAATGCATCAGATGGCCTTTTAGGCCTGGTAGACAGTG AGCACATGTTCAATTCCAAGGCAAATCCGTTCGTGGCCGTGGAGTTCGACACGCATTACAATTCCAATTGCGACACTTTGTCTGGTGGCCACGTTGGCAT TAATATCAATTCCATCAAGTCTGTCGCCAACAAGATGTGGCAGAGTTACGCGAATAGGACCATTATGTCGGCCAGCGTGTCTTACAAAGCCAAGAACCTC TGTGCAGAGTTCACAGGGCTCGATGAGTTGACCGTAGTTGGCCAAGAACAAACAGTGACGGTTGATGTTCCCCTGGATACACTATGCTATGAATTGGATT TGAAGGATTATCTAACAGAGTGGGCTGTATTCGGCTTTTCCGCATCAACGGCCTTTAGGTACCAAACTCAGACGCTCAAGACATGGTCATTTTACTCCGA GTTAGACTCAGAAGGTGGAGCCACCCTAGTACATTCAAAAGTTAAAAAAGAAGAAGGCAAGAAAACCAGCAAGAGCTTAACTATTGGATTGGCAGCCGGA ATAATTGGTGGTCTTGCGATACTAATGTTGGCCGGTACAACAATTTGTTCACGATGCAATAAAAAGACGGCACGTGACTATCGCTCTGATTCGGGATGCA GATCCCCTGACGGTTTCCTCGCCACAAGAAAGGACCGTTCGGTTACTCTAGGGAGTGACTAG
AA sequence Show only first row Show all	>Lus10014649 pacid=23149642 polypeptide=Lus10014649 locus=Lus10014649.g ID=Lus10014649.BGIv1.0 annot-version=v1.0 MDVGTSMISIITVFIWSLFISVGETAPLSFNYTNFDKCSDSLEFFETAACGDSGLELTNSDYYVTGQVHYSKPMRLWDASTGNLTTFNTTFSFSMDNFNG SYTCDGIAFFIASINYTMPSINASDGLLGLVDSEHMFNSKANPFVAVEFDTHYNSNCDTLSGGHVGININSIKSVANKMWQSYANRTIMSASVSYKAKNL CAEFTGLDELTVVGQEQTVTVDVPLDTLCYELDLKDYLTEWAVFGFSASTAFRYQTQTLKTWSFYSELDSEGGATLVHSKVKKEEGKKTSKSLTIGLAAG IIGGLAILMLAGTTICSRCNKKTARDYRSDSGCRSPDGFLATRKDRSVTLGSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10014649 [exp]	0	1
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10019897 [exp]	1.0	0.9038
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10030296 [exp]	4.7	0.8278
AT4G31410			Protein of unknown function (D...		Lus10020151 [exp]	6.9	0.8776
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10038337 [exp]	6.9	0.8504
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	13.0	0.8378
AT4G31410			Protein of unknown function (D...		Lus10026950 [exp]	13.5	0.8510
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	17.3	0.8304
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	17.9	0.8143
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Lus10000776 [exp]	18.0	0.8257
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018377 [exp]	18.2	0.7873

Compare expression of checked genes

Lus10014649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.