Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014649 [exp] 203 / 8e-65 AT5G10530 91 / 8e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033778 [exp] 172 / 1e-52 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033779 [exp] 169 / 1e-51 AT5G10530 97 / 7e-22 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033776 [exp] 150 / 4e-44 AT2G37710 91 / 8e-20 receptor lectin kinase (.1) Lus10014651 [exp] 145 / 2e-42 AT2G37710 96 / 3e-21 receptor lectin kinase (.1) Lus10014652 [exp] 129 / 4e-36 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033782 [exp] 73 / 4e-15 AT5G10530 351 / 2e-108 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033781 [exp] 69 / 5e-14 AT5G10530 99 / 4e-23 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014650 pacid=23149617 polypeptide=Lus10014650 locus=Lus10014650.g ID=Lus10014650.BGIv1.0 annot-version=v1.0 ATGGATGTCGGAACAAGCATGATCAGTATCATCGCCGTTTTCATATGCTCGTCCCTCTTCATCTCAGTATGCGAAACCGCGCCCTTGTTCTTCAACTACA CCAACTTCGACAAATGCAGCGACTCCCTCAAACTCTTTGAAACCGCAGCTTGTGGAGGTTCAGGGCTGGAACTCACCAACTCCGACAACTACGTAACAGG GCAGGATTATCTGACAGAATGGGCTATGTTTGGCTTCTCCGCATCAACTGCGTTTAGCTACCAGACTCAGACGCTCAAAACATGGTCATTTTACTCCGAG CTAGGCTCAGAAGGTGGACCTACCCTAGTCGATTCAGAAATTCAAAAAGAAGAAGGCAAGAAAATCAGCAAGAGGTTAACTATTGGATTGGCAGCCGAAA CTATTGGTGGTCTTGCGATACTAATATTGGCCGGTACAACAATTTGTTCTCGCTGCAATAAGAAGCCGACACGCGATTATCGCTCTGATTCAGGATGCCG ATCCCCTGACGGTTTCCTCACCACAAGAAAAGAGAGTTCGGTTACTTTAGGAAAAATGACTAGATAG
AA sequence Show only first row Show all	>Lus10014650 pacid=23149617 polypeptide=Lus10014650 locus=Lus10014650.g ID=Lus10014650.BGIv1.0 annot-version=v1.0 MDVGTSMISIIAVFICSSLFISVCETAPLFFNYTNFDKCSDSLKLFETAACGGSGLELTNSDNYVTGQDYLTEWAMFGFSASTAFSYQTQTLKTWSFYSE LGSEGGPTLVDSEIQKEEGKKISKRLTIGLAAETIGGLAILILAGTTICSRCNKKPTRDYRSDSGCRSPDGFLTTRKESSVTLGKMTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014650 [exp]	0	1
					Lus10027457 [exp]	1.4	0.9869
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	3.2	0.9806
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10005733 [exp]	3.5	0.9769
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	3.9	0.9806
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	4.5	0.9806
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10001298 [exp]	4.8	0.7090
AT4G30590		AtENODL12	early nodulin-like protein 12 ...		Lus10019955 [exp]	4.9	0.8185
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	5.0	0.9806
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024186 [exp]	5.2	0.9044
					Lus10024934 [exp]	5.8	0.7910

Compare expression of checked genes

Lus10014650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.