Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 76 / 7e-15 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 70 / 1e-12 RLK receptor lectin kinase (.1) AT3G55550 69 / 2e-12 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 64 / 5e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 59 / 2e-09 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 58 / 6e-09 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 57 / 9e-09 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 55 / 6e-08 Concanavalin A-like lectin protein kinase family protein (.1) AT2G43690 55 / 6e-08 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 53 / 2e-07 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014652 [exp] 503 / 1e-179 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033776 [exp] 472 / 1e-167 AT2G37710 91 / 8e-20 receptor lectin kinase (.1) Lus10014649 [exp] 417 / 9e-146 AT5G10530 91 / 8e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033779 [exp] 383 / 1e-132 AT5G10530 97 / 7e-22 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033778 [exp] 371 / 6e-128 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033781 [exp] 314 / 1e-106 AT5G10530 99 / 4e-23 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033782 [exp] 329 / 5e-104 AT5G10530 351 / 2e-108 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033777 [exp] 202 / 6e-65 AT4G02410 49 / 9e-08 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014650 [exp] 116 / 8e-31 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 120 / 1e-29 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 120 / 1e-29 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 118 / 5e-29 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 117 / 9e-29 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 112 / 4e-27 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 112 / 4e-27 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 108 / 2e-25 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 107 / 3e-25 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 102 / 2e-23 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 101 / 3e-23 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10014651 pacid=23149630 polypeptide=Lus10014651 locus=Lus10014651.g ID=Lus10014651.BGIv1.0 annot-version=v1.0 ATGGAAGTCCGAACAAGCATGATCAGAATCATCGCCGTGTTAATTACTTCGTCCCTTTTCATCCCAACATATCATACGGCCCCGTTGTCCTTCAATCTCA CCAACTTCAACAAATGCAGCGACAACTCCATCAAAGTCTTTGAAACTGCAGCTTGCGGAAATTCAGGGGTCCAACTCACCAGCGATGACTTCTACATAAC TGGGCAGGCCCATTACTCCAAACCAATGCGTCTATGGAAAGCCTCCACGGGAAACCTGACCAATTTCAACACCAATTTCACCTTCTCAATGGACAACAAG AACAGCACCTACACCTGCGATGGCCTAGCCTTCTTCATCGCCTCCTTCAACTATACCACTCCCGCCGTCAATGCATCGTCAGATGGCCGTTTCGGTTTGG TAGACAGTAGCCACGAGTTAAATTCCATAGGGAATCCGTTCGTGGCGGTGGAGTTCGATACCTATTACAACTCCGAATGGGACACGTTGAGTGATATCCA CGTTGGCATTAATATCAATTCAATAAAGTCCGTTGCCAGCAAGAGATGGCGGAGTTATTCGAATGGGACGACTATGTCGGCCAACGTGTCTTACAAGGCC AAAAACCTGTGCGTAGAGTTCACGGGAATAACGGAGTCGACGGAAAGTGGTGAACAACAACAACAGCAACAAACACAGCTGGAGCTGGTGGATGTTCCCG GGGATACATTATGTTACGAAATTGACTTGAAGGATTACCTGGCGGAATGGGCTGTGTTTGGGTTCTCTGCATCAACGGCATTTAGGTATCAATCTCACAC GCTCAAGACGTGGTCGTTTTACTCCGATTTAGACTCCGAGGGTGGTCCCAACATTGTCAATTCGGGAGTTAACAAAAGCAATACCCAAAATGGAAAAGAA GAAGGCAAGAAAACTAACAAGAGCTTAGTTATTGGATTGCCGGTGGGAATAATCGGTGTTCTTGTGATACTAATATTGGTTGGTTTGGTAATTCGGTCTC GCTCCAATAAAAGACCAGAATCCAACCCACACTCGGATTCTGGACGCCGATCCCCAGAAGGTTTCCTCACTGCCAGAAAGGGTCGTTCGTCTGTAGTCAA AGGGACTAAATAG
AA sequence Show only first row Show all	>Lus10014651 pacid=23149630 polypeptide=Lus10014651 locus=Lus10014651.g ID=Lus10014651.BGIv1.0 annot-version=v1.0 MEVRTSMIRIIAVLITSSLFIPTYHTAPLSFNLTNFNKCSDNSIKVFETAACGNSGVQLTSDDFYITGQAHYSKPMRLWKASTGNLTNFNTNFTFSMDNK NSTYTCDGLAFFIASFNYTTPAVNASSDGRFGLVDSSHELNSIGNPFVAVEFDTYYNSEWDTLSDIHVGININSIKSVASKRWRSYSNGTTMSANVSYKA KNLCVEFTGITESTESGEQQQQQQTQLELVDVPGDTLCYEIDLKDYLAEWAVFGFSASTAFRYQSHTLKTWSFYSDLDSEGGPNIVNSGVNKSNTQNGKE EGKKTNKSLVIGLPVGIIGVLVILILVGLVIRSRSNKRPESNPHSDSGRRSPEGFLTARKGRSSVVKGTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10014651 [exp]	0	1
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	12.8	0.8589
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	23.1	0.8567
					Lus10017445 [exp]	26.1	0.8376
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008958 [exp]	38.1	0.8528
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10018510 [exp]	39.5	0.8368
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	40.6	0.8196
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10000711 [exp]	46.0	0.8488
AT5G05070			DHHC-type zinc finger family p...		Lus10035395 [exp]	46.0	0.8119
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	48.7	0.8206
AT3G29034			unknown protein		Lus10033010 [exp]	55.9	0.8299

Compare expression of checked genes

Lus10014651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.