Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 72 / 2e-13 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 71 / 2e-13 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 68 / 4e-12 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 67 / 5e-12 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 67 / 8e-12 RLK receptor lectin kinase (.1) AT5G55830 66 / 1e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 66 / 1e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 65 / 4e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT2G43690 58 / 4e-09 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60270 58 / 4e-09 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014651 [exp] 539 / 0 AT2G37710 96 / 3e-21 receptor lectin kinase (.1) Lus10033776 [exp] 506 / 0 AT2G37710 91 / 8e-20 receptor lectin kinase (.1) Lus10014649 [exp] 434 / 1e-152 AT5G10530 91 / 8e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033779 [exp] 400 / 2e-139 AT5G10530 97 / 7e-22 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033778 [exp] 399 / 4e-139 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033782 [exp] 336 / 6e-107 AT5G10530 351 / 2e-108 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033781 [exp] 312 / 6e-106 AT5G10530 99 / 4e-23 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033777 [exp] 159 / 3e-48 AT4G02410 49 / 9e-08 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014650 [exp] 129 / 1e-35 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262866 [exp] 128 / 2e-32 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 128 / 2e-32 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 128 / 2e-32 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 124 / 5e-31 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 124 / 7e-31 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 123 / 1e-30 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 119 / 2e-29 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 117 / 1e-28 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 108 / 1e-25 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 107 / 2e-25 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10014652 pacid=23149613 polypeptide=Lus10014652 locus=Lus10014652.g ID=Lus10014652.BGIv1.0 annot-version=v1.0 ATGGAAGTCCGAACAAGTATGATCGGAATCATCATCACCGTGTTTACTTCGTTCCTCTTCATCCCAATATGCCATACGGCGCCGTTTTCCTTCAACCTCA ACAACTTCACCAAATGCAGCAACAACTCCATCAAAGTCTTTGAAAGTGCAGCTTGCGGAAGTTCAGGGGTCCAACTCACCAGCGACGACTTCTATATATA CGGTCAGGCCCATTACTCCAAACCAATGCGCCTATGGGACGCCTCCACGGGCAACCTTACCAATTTCAACACCAATTTCACCTTCTCAATGGACAACAAC AACGCCAGCCATACCTGTGACGGCCTAGCCTTCTTCATCGCCTCATTCAATTACACCACTCCCGCTGCCAATGCATCAGATGGCCGTTTGGGCCTGGTAG ACCGTAACCACATGTTGAATTCCACGGAGAATCCGTTCGTGGCGGTAGAGTTTGATACGTACTATAACTCCTACTGGGACACGTTGACTAATAACCACGT CGGAATTGATATCAACTCCGTAAAGTCCGTTGCCAACAAGAGGTGGCGGAATTATTCGAATGGGAGCATTATGTCTGCCAGCGTGTCTTACACGTCGAAA AACTTGTGCGTGGAGTTCACAGGAATCACGGAGTCAACAGAAGTTTCTCAGCAACAAGCCGAATTGGTGGACGTTCCTGGGGATACACTATGCTACGAAT TGGATTTGAAAGAGTACCTGACGGAGTGGGCTGTGTTCGGGTTCTCCGCATCAACGGCGTTTAGGTACCAATCTCACACCATCAAAACGTGGTCATTTTA CTCCGATTTAGACTCTGAGAGCGGTCCCGGCATTGTCAATTCGGAAGTTAACAAGAGCAATACCCAAACTGGAAAAAAAAGAGGCAAGAACACTAACAAA AGCTTAATTATTGGACTGCCGGTGGGGATTATCTCTGTTCTTGGAATACTTGTGGCCGGTTTTGTAATTTGGGCCCATTCCAATAAAAGATCAGGATCCG ACCTACACTCTGATTCCGGACGTCGATCCCCAGAAGGTTTCCTCACCACTAGAAGGGATCGTTCGTCTATAGTGAGAGGGACCGGAACCAGATAG
AA sequence Show only first row Show all	>Lus10014652 pacid=23149613 polypeptide=Lus10014652 locus=Lus10014652.g ID=Lus10014652.BGIv1.0 annot-version=v1.0 MEVRTSMIGIIITVFTSFLFIPICHTAPFSFNLNNFTKCSNNSIKVFESAACGSSGVQLTSDDFYIYGQAHYSKPMRLWDASTGNLTNFNTNFTFSMDNN NASHTCDGLAFFIASFNYTTPAANASDGRLGLVDRNHMLNSTENPFVAVEFDTYYNSYWDTLTNNHVGIDINSVKSVANKRWRNYSNGSIMSASVSYTSK NLCVEFTGITESTEVSQQQAELVDVPGDTLCYELDLKEYLTEWAVFGFSASTAFRYQSHTIKTWSFYSDLDSESGPGIVNSEVNKSNTQTGKKRGKNTNK SLIIGLPVGIISVLGILVAGFVIWAHSNKRSGSDLHSDSGRRSPEGFLTTRRDRSSIVRGTGTR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10014652 [exp]	0	1
					Lus10041676 [exp]	5.5	0.9401
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	15.0	0.9369
AT3G47570			Leucine-rich repeat protein ki...		Lus10020140 [exp]	18.0	0.9297
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10017067 [exp]	18.8	0.8932
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10037904 [exp]	18.8	0.9314
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006463 [exp]	19.4	0.9355
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	21.9	0.9171
AT3G22260			Cysteine proteinases superfami...		Lus10003816 [exp]	24.2	0.9243
					Lus10012065 [exp]	29.5	0.8895
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	34.2	0.9291

Compare expression of checked genes

Lus10014652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.