Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10650 367 / 6e-126 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G41670 223 / 8e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02790 80 / 2e-16 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT3G07050 57 / 1e-08 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT1G52980 47 / 2e-05 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006578 [exp] 663 / 0 AT4G10650 394 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031060 [exp] 209 / 1e-64 AT2G41670 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006927 [exp] 81 / 7e-17 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10014672 [exp] 81 / 3e-16 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10028574 [exp] 57 / 2e-08 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 56 / 3e-08 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018858 [exp] 42 / 0.001 AT3G07050 622 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083100 [exp] 352 / 2e-120 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G048900 [exp] 211 / 4e-65 AT2G41670 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G209900 [exp] 87 / 1e-18 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.002G241100 [exp] 52 / 4e-07 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.001G402500 [exp] 50 / 1e-06 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10014654 pacid=23165587 polypeptide=Lus10014654 locus=Lus10014654.g ID=Lus10014654.BGIv1.0 annot-version=v1.0 ATGGCGAGTTCGATAGCACGGGAACTCGGGAATGCGGTGCAGAAAGCGGCGAGGATTAAGGGGAAAGGATGGTACACGCCTCACATGGCTGCTGCGGCAT CCGCTATTGCGAGAAGAATCGAGCTGGTTGATATTGTTCTGGAAGTTAGAGATGCTAGGATTCCTTGGGCATCTGAGTATCCTCTGTATAGACAGCAGTG GCCTTCCAAACCTTGGATCATTGCTTTGAACAAGATGGACCTTGCTGATCGTTCACAAACCCAGGAGTGGAGGAAGTATTTTGGGCAGCGTAATTGGGTT TCGTATGCTGTGAATTCCCATAACAAGGACAATGTGAAAGAGTTCCTTAACTTTCTTCAATCGCAAGTCCGAGCATTAAACAAGGACAATCCTCGCCTGA CAAGGAATGTGATGATTGTAGGGATTCCAAATGTTGGCAAATCAGCTCTTGCCAATTCCTTGCATCAGATTGGGAGGATTAGCGCTCTTGAAAGAGGGAA GTTCCGGTATGCAACGGTGAGTCCACATCCAGGAGAGACTAAGGATATTATTAGCTTGAAGGTTGCTAGCCATCCGAATATTTACGTACTGGACACCCCT GGTATATTGCCCCCTGAAATCCTCAATATTGAGAAGTGCTCCAAGCTAGCTCTAACAGGAGTGATTAAGGACTGCATTGTTGGGGAGGAGAAACTTGCTC AGTACTTCCTCGCTATTCTAACCTTAGGCAGTGAATACAAAAAATGGGCAACTACTGGAAAGGGAAGCATTTCGAGCAGTCCGAAACCTGAAGGGAAACG CGGAGATCATTCTTCGACTGACCACACACAGGATTTCATAGTGCATGAAGTGCGGCAAAGTCTTTACAGGACGATCACAGGTTTCCATAGCTACTTGCAA AAGGTTGAGGACTTGATAGAGCCGATTGAAATGCAGTTCAATGGTTTGGAAGAAGTTTTCCGGATCCCGGCAGGATCGGGTGATGTAGGTCGTAGAAATG TAGGTTTTAAACTGCTGAACATGTATCGTACAGGTAGGCTCGGACACTACACTTTAGACAAGCCTGCATTTCCAGCGTAG
AA sequence Show only first row Show all	>Lus10014654 pacid=23165587 polypeptide=Lus10014654 locus=Lus10014654.g ID=Lus10014654.BGIv1.0 annot-version=v1.0 MASSIARELGNAVQKAARIKGKGWYTPHMAAAASAIARRIELVDIVLEVRDARIPWASEYPLYRQQWPSKPWIIALNKMDLADRSQTQEWRKYFGQRNWV SYAVNSHNKDNVKEFLNFLQSQVRALNKDNPRLTRNVMIVGIPNVGKSALANSLHQIGRISALERGKFRYATVSPHPGETKDIISLKVASHPNIYVLDTP GILPPEILNIEKCSKLALTGVIKDCIVGEEKLAQYFLAILTLGSEYKKWATTGKGSISSSPKPEGKRGDHSSTDHTQDFIVHEVRQSLYRTITGFHSYLQ KVEDLIEPIEMQFNGLEEVFRIPAGSGDVGRRNVGFKLLNMYRTGRLGHYTLDKPAFPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10650			P-loop containing nucleoside t...		Lus10014654 [exp]	0	1
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10014124 [exp]	7.3	0.7548
AT1G61670			Lung seven transmembrane recep...		Lus10012872 [exp]	11.2	0.6683
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10012735 [exp]	15.5	0.6858
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Lus10003791 [exp]	16.9	0.6890
AT3G14890			phosphoesterase (.1.2)		Lus10037922 [exp]	17.6	0.7039
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	20.5	0.6485
AT1G05730			Eukaryotic protein of unknown ...		Lus10025588 [exp]	21.4	0.6795
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	25.0	0.6927
AT1G06980			unknown protein		Lus10009561 [exp]	26.3	0.6239
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10038906 [exp]	32.4	0.6538

Compare expression of checked genes

Lus10014654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.